SMTL ID : 8y8h.1

Structure of HCoV-HKU1C spike in the glycan-activated-2up conformation

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-trimer

Ligands

11 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: H.129, E.134, N.175 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.129 NAG.2: 3 residues within 4Å: Chain A: F.648, L.649, N.651 No protein-ligand interaction detected (PLIP) NAG.3: 4 residues within 4Å: Chain A: F.700, D.701, N.712, T.714 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.701, A:D.701 NAG.4: 2 residues within 4Å: Chain A: N.45, E.259 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:E.259 NAG.5: 1 residues within 4Å: Chain A: N.780 No protein-ligand interaction detected (PLIP) NAG.6: 3 residues within 4Å: Chain B: F.700, D.701, N.712 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.701 NAG.7: 1 residues within 4Å: Chain B: N.780 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.780 NAG.8: 2 residues within 4Å: Chain B: L.649, N.651 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.651 NAG.9: 5 residues within 4Å: Chain C: H.129, I.132, E.134, K.173, N.175 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:H.129 NAG.10: 2 residues within 4Å: Chain C: N.179, S.181 No protein-ligand interaction detected (PLIP) NAG.11: 2 residues within 4Å: Chain C: D.701, N.712 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:D.701, C:N.712

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, H. et al., TMPRSS2 and glycan receptors synergistically facilitate coronavirus entry. Cell (2024)

Release Date

2024-07-17

Peptides

Spike glycoprotein: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
B

C
A

Spike glycoprotein

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