SMTL ID : 8yih.1

DmDcr-2/LoqsPD/slm1 in pre-dicing state

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain B: K.33 Ligands: ADP.2 No protein-ligand interaction detected (PLIP) MG.3: 4 residues within 4Å: Chain B: C.386, F.449, Q.470, C.472 No protein-ligand interaction detected (PLIP)

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2: 14 residues within 4Å: Chain B: I.5, K.6, P.7, R.8, Q.11, T.29, G.30, S.31, G.32, K.33, T.34, F.35, Y.213 Ligands: MG.1 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:R.8, B:R.8, B:R.8, B:Q.11, B:G.30, B:S.31, B:G.32, B:K.33, B:T.34, B:Y.213 Salt bridges: B:K.33 pi-Stacking: B:F.35

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cao, N. et al., Structural basis of endo-siRNA processing by Drosophila Dicer-2 and Loqs-PD. Nucleic Acids Res. (2025)

Release Date

2025-03-05

Peptides

Isoform PD of Protein Loquacious: A
Dicer-2, isoform A: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Isoform PD of Protein Loquacious

Dicer-2, isoform A

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