SMTL ID : 8yjb.1

Cryo-EM structure of the human DSS1-INTAC complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 8 residues within 4Å: Chain C: H.70, D.72, H.73, D.178, Y.353, H.392, H.414 Ligands: ZN.2 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:D.72, C:H.73, C:D.178, C:H.414 ZN.2: 7 residues within 4Å: Chain C: H.68, H.70, H.73, H.157, D.178, H.392 Ligands: ZN.1 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:H.68, C:H.70, C:H.157, C:D.178

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.3: 4 residues within 4Å: Chain H: D.85, N.117, H.167, H.241 3 PLIP interactions: 3 interactions with chain H Metal complexes: H:D.85, H:H.167, H:H.241 MN.4: 3 residues within 4Å: Chain H: H.59, D.85, Y.86 3 PLIP interactions: 3 interactions with chain H Metal complexes: H:H.59, H:H.59, H:D.85

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, C. et al., Stabilization of Integrator/INTAC by the small but versatile DSS1 protein. To Be Published

Release Date

2025-03-05

Peptides

26S proteasome complex subunit DSS1: A
Integrator complex subunit 9: B
Integrator complex subunit 11: C
Integrator complex subunit 2: D
Integrator complex subunit 4: E
Integrator complex subunit 7: F
Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform: G
Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform: H
Integrator complex subunit 1: I
Integrator complex subunit 5: J
Integrator complex subunit 6: K
Integrator complex subunit 8: L

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
0

B
I

C
K

D
B

E
D

F
G

G
P

H
Q

I
A

J
E

K
F

L
H

26S proteasome complex subunit DSS1

Integrator complex subunit 9

Integrator complex subunit 11

Integrator complex subunit 2

Integrator complex subunit 4

Integrator complex subunit 7

Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform

Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform

Integrator complex subunit 1

Integrator complex subunit 5

Integrator complex subunit 6

Integrator complex subunit 8

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