SMTL ID : 5gjq.1

Structure of the human 26S proteasome bound to USP14-UbAl

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 4.50 Å

Oligo State

hetero-2-2-2-2-2-2-2-2-2-2-2-2-2-1-1-1-1-1-1-1-2-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

6 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 17 residues within 4Å: Chain N: D.176, V.177, G.178, P.218, G.219, T.220, G.221, K.222, T.223, L.224, N.322, I.354, G.382, A.383 Chain P: D.317, R.343, R.346 14 PLIP interactions: 10 interactions with chain N, 4 interactions with chain P Hydrogen bonds: N:G.178, N:G.178, N:G.219, N:T.220, N:G.221, N:K.222, N:T.223, N:N.322, P:R.343 Salt bridges: N:K.222, N:K.222, P:R.343, P:R.343, P:R.346 ADP.2: 19 residues within 4Å: Chain P: D.186, I.187, G.188, G.189, P.228, G.229, T.230, G.231, K.232, T.233, L.234, K.237, I.364, H.368, G.392, A.393, K.396 Chain R: R.307, R.310 12 PLIP interactions: 9 interactions with chain P, 3 interactions with chain R Hydrogen bonds: P:G.189, P:G.229, P:K.232, P:T.233, P:T.233, P:L.234, P:K.237, P:G.392 Salt bridges: P:K.232, R:R.307, R:R.307, R:R.310 ADP.3: 16 residues within 4Å: Chain R: M.150, I.151, G.152, L.154, G.193, T.194, G.195, K.196, T.197, L.198, D.249, I.328, H.332, G.356, A.357, K.360 11 PLIP interactions: 11 interactions with chain R Hydrogen bonds: R:G.152, R:G.193, R:T.194, R:G.195, R:K.196, R:T.197, R:T.197, R:T.197, R:D.249, R:K.360 Salt bridges: R:K.196 ADP.4: 14 residues within 4Å: Chain T: D.166, I.167, G.168, G.209, C.210, G.211, K.212, T.213, M.214, I.344, G.372, A.373 Chain V: R.291, R.294 14 PLIP interactions: 10 interactions with chain T, 4 interactions with chain V Hydrogen bonds: T:G.168, T:G.168, T:G.209, T:G.211, T:K.212, T:T.213, T:T.213, T:M.214, V:R.291 Salt bridges: T:K.212, T:K.212, V:R.291, V:R.291, V:R.294 ADP.5: 14 residues within 4Å: Chain V: G.136, P.176, G.177, T.178, G.179, K.180, T.181, L.182, N.280, I.312, H.316, R.344 Chain X: R.344, R.347 14 PLIP interactions: 3 interactions with chain X, 11 interactions with chain V Salt bridges: X:R.344, X:R.344, X:R.347, V:K.180 Hydrogen bonds: V:G.136, V:G.177, V:G.179, V:K.180, V:T.181, V:T.181, V:L.182, V:N.280, V:N.280, V:R.344 ADP.6: 19 residues within 4Å: Chain N: R.333, R.336 Chain X: D.187, I.188, G.189, P.229, G.230, T.231, G.232, K.233, T.234, L.235, N.333, I.365, I.368, H.369, G.393, A.394, K.397 12 PLIP interactions: 9 interactions with chain X, 3 interactions with chain N Hydrogen bonds: X:G.189, X:G.189, X:K.233, X:T.234, X:T.234, X:T.234, X:N.333, X:N.333, N:R.336 Salt bridges: X:K.233, N:R.333, N:R.333

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, X. et al., An atomic structure of the human 26S proteasome. Nat. Struct. Mol. Biol. (2016)

Release Date

2016-08-17

Peptides

Proteasome subunit beta type-6: A2
Proteasome subunit alpha type-6: BO
Proteasome subunit beta type-7: C4
Proteasome subunit alpha type-2: DQ
Proteasome subunit beta type-3: E6
Proteasome subunit alpha type-4: FS
Proteasome subunit beta type-2: G8
Proteasome subunit alpha type-7: HU
Proteasome subunit beta type-5: Ia
Proteasome subunit alpha type-5: JW
Proteasome subunit beta type-1: Kc
Proteasome subunit alpha type-1: LY
Proteasome subunit beta type-4: Me
26S protease regulatory subunit 7: N
26S protease regulatory subunit 4: P
26S protease regulatory subunit 8: R
26S protease regulatory subunit 6B: T
26S protease regulatory subunit 10B: V
26S protease regulatory subunit 6A: X
26S proteasome non-ATPase regulatory subunit 1: Z
Proteasome subunit alpha type-3: 0h
26S proteasome non-ATPase regulatory subunit 13: 1
26S proteasome non-ATPase regulatory subunit 12: 3
26S proteasome non-ATPase regulatory subunit 11: 5
26S proteasome non-ATPase regulatory subunit 6: 7
26S proteasome non-ATPase regulatory subunit 3: 9
26S proteasome non-ATPase regulatory subunit 8: b
26S proteasome non-ATPase regulatory subunit 7: d
26S proteasome non-ATPase regulatory subunit 14: f
26S proteasome non-ATPase regulatory subunit 4: g
26S proteasome complex subunit DSS1: i
26S proteasome non-ATPase regulatory subunit 2: j
Ubiquitin carboxyl-terminal hydrolase 14: k
Polyubiquitin-B: l

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
a

2
o

B
B

O
h

C
b

4
p

D
C

Q
i

E
c

6
q

F
D

S
j

G
d

8
r

H
E

U
k

I
e

a
s

J
F

W
l

K
f

c
t

L
G

Y
m

M
g

e
u

N
H

P
I

R
J

T
K

V
L

X
M

Z
N

0
n

h
X

1
O

3
P

5
Q

7
R

9
S

b
T

d
U

f
V

g
W

i
Y

j
Z

k
x

l
y

Proteasome subunit beta type-6

Proteasome subunit alpha type-6

Proteasome subunit beta type-7

Proteasome subunit alpha type-2

Proteasome subunit beta type-3

Proteasome subunit alpha type-4

Proteasome subunit beta type-2

Proteasome subunit alpha type-7

Proteasome subunit beta type-5

Proteasome subunit alpha type-5

Proteasome subunit beta type-1

Proteasome subunit alpha type-1

Proteasome subunit beta type-4

26S protease regulatory subunit 7

26S protease regulatory subunit 4

26S protease regulatory subunit 8

26S protease regulatory subunit 6B

26S protease regulatory subunit 10B

26S protease regulatory subunit 6A

26S proteasome non-ATPase regulatory subunit 1

Proteasome subunit alpha type-3

26S proteasome non-ATPase regulatory subunit 13

26S proteasome non-ATPase regulatory subunit 12

26S proteasome non-ATPase regulatory subunit 11

26S proteasome non-ATPase regulatory subunit 6

26S proteasome non-ATPase regulatory subunit 3

26S proteasome non-ATPase regulatory subunit 8

26S proteasome non-ATPase regulatory subunit 7

26S proteasome non-ATPase regulatory subunit 14

26S proteasome non-ATPase regulatory subunit 4

26S proteasome complex subunit DSS1

26S proteasome non-ATPase regulatory subunit 2

Ubiquitin carboxyl-terminal hydrolase 14

Polyubiquitin-B

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