SMTL ID : 8yo4.1

structure of phage T4 topoisomerase II central domain bound with DNA

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-mer

Ligands

4 x MG: MAGNESIUM ION

MG.1: 4 residues within 4Å: Chain B: E.415, A.419, D.557 Chain C: Y.117 No protein-ligand interaction detected (PLIP) MG.2: 6 residues within 4Å: Chain B: E.415, D.557, D.559, K.627 Chain F: T.18, A.19 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.557, B:D.559, B:D.559 MG.3: 3 residues within 4Å: Chain D: A.419, D.557, L.629 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:D.557, D:D.557 MG.4: 5 residues within 4Å: Chain D: E.415, D.557, D.559, G.562 Chain E: T.30 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:E.415

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, Y.T. et al., structure of phage T4 topoisomerase II central domain bound with DNA. To be published

Release Date

2024-09-25

Peptides

DNA topoisomerase medium subunit: AC
phage T4 topoisomerase II gp39-gp60 subunit: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
B

B
C

D
D

DNA topoisomerase medium subunit

phage T4 topoisomerase II gp39-gp60 subunit

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