SMTL ID : 8yo7.1

structure of phage T6 topoisomerase II central domain bound with DNA and m-AMSA

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-mer

Ligands

2 x MG: MAGNESIUM ION

MG.1: 2 residues within 4Å: Chain C: D.488 Chain H: T.30 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:D.488 MG.2: 4 residues within 4Å: Chain A: H.74 Chain D: D.486, D.488 Chain G: T.18 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:D.488

2 x ASW: N-[4-(acridin-9-ylamino)-3-methoxyphenyl]methanesulfonamide

ASW.3: 8 residues within 4Å: Chain D: R.438, G.439, K.456, E.457 Chain E: T.34, A.35 Chain F: A.19 Chain G: T.18 2 PLIP interactions: 2 interactions with chain D Hydrophobic interactions: D:K.456 Hydrogen bonds: D:R.438 ASW.4: 8 residues within 4Å: Chain C: R.438, G.439, K.456, E.457 Chain E: A.31 Chain F: T.22, A.23 Chain H: T.30 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:G.439

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, Y.T. et al., structure of phage T6 topoisomerase II central domain bound with DNA and m-AMSA. To be published

Release Date

2024-09-25

Peptides

DNA topoisomerase medium subunit: AB
DNA topoisomerase (ATP-hydrolyzing): CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

DNA topoisomerase medium subunit

DNA topoisomerase (ATP-hydrolyzing)

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