SMTL ID : 8yon.1

structure of phage T6 full-length topoisomerase II bound with DNA

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-mer

Ligands

2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER

ANP.1: 24 residues within 4Å: Chain C: E.54, N.58, S.59, E.62, D.87, I.92, A.111, W.112, A.117, G.118, G.119, G.131, M.132, N.133, G.134, V.135, G.136, S.137, S.138, T.181, V.183, Q.329, K.331 Chain D: N.4 16 PLIP interactions: 15 interactions with chain C, 1 interactions with chain D Hydrogen bonds: C:N.58, C:E.62, C:G.119, C:M.132, C:N.133, C:N.133, C:G.134, C:V.135, C:V.135, C:G.136, C:S.137, C:S.137, C:S.138, C:Q.329, C:K.331, D:N.4 ANP.2: 21 residues within 4Å: Chain D: E.54, I.55, D.57, N.58, D.61, E.62, R.65, I.92, W.112, N.120, G.131, M.132, N.133, G.134, V.135, G.136, S.137, T.181, V.183, Q.329, K.331 16 PLIP interactions: 16 interactions with chain D Hydrogen bonds: D:E.54, D:N.58, D:N.58, D:N.120, D:M.132, D:N.133, D:N.133, D:G.134, D:V.135, D:G.136, D:S.137, D:S.137, D:S.137, D:Q.329, D:Q.329, D:K.331

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, Y.T. et al., structure of phage T6 full-length topoisomerase II bound with DNA. To be published

Release Date

2024-09-25

Peptides

DNA topoisomerase medium subunit: AB
DNA topoisomerase (ATP-hydrolyzing): CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

DNA topoisomerase medium subunit

DNA topoisomerase (ATP-hydrolyzing)

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