8yod.1 | SWISS-MODEL Template Library

SMTL ID : 8yod.1

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-mer

Ligands

2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER

ANP.1:	20 residues within 4Å: Chain B: E.54, N.58, D.61, E.62, I.92, A.111, W.112, A.117, G.118, G.119, N.120, G.131, M.132, N.133, G.134, V.135, G.136, S.137, T.181, K.331 15 PLIP interactions: 15 interactions with chain B Hydrogen bonds: B:E.54, B:E.54, B:N.58, B:N.58, B:G.119, B:N.120, B:N.120, B:M.132, B:N.133, B:G.134, B:V.135, B:G.136, B:S.137, B:S.137, B:K.331
ANP.2:	20 residues within 4Å: Chain C: E.54, N.58, I.92, A.111, W.112, A.117, G.118, G.119, N.120, G.130, G.131, M.132, N.133, G.134, V.135, G.136, S.137, T.181, Q.329, K.331 12 PLIP interactions: 12 interactions with chain C Hydrogen bonds: C:W.112, C:G.119, C:N.120, C:M.132, C:N.133, C:N.133, C:G.134, C:V.135, C:G.136, C:S.137, C:S.137, C:Q.329

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Chen, Y.T. et al., structure of phage T6 apo full-length topoisomerase II. To be published

Release Date

2024-09-25

Peptides

DNA topoisomerase medium subunit: AD
DNA topoisomerase (ATP-hydrolyzing): BC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
B

B
C

C
D