SMTL ID : 8yqy.1

ASFV RNA polymerase-M1249L complex complete

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-mer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: D.457, D.459, D.461 Chain I: D.1244 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.457, A:D.459, A:D.459, A:D.461

9 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.59, C.62, C.69, H.72 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.59, A:C.62, A:C.69, A:H.72 ZN.3: 4 residues within 4Å: Chain A: C.99, C.102, C.134, C.137 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.99, A:C.102, A:C.134, A:C.137 ZN.4: 4 residues within 4Å: Chain B: C.1180, C.1183, C.1198, C.1201 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.1180, B:C.1183, B:C.1198, B:C.1201 ZN.5: 4 residues within 4Å: Chain G: C.73, C.76, C.96, C.98 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:C.73, G:C.76, G:C.96, G:C.98 ZN.6: 4 residues within 4Å: Chain G: C.4, C.7, C.24, C.26 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:C.4, G:C.7, G:C.24, G:C.26 ZN.7: 5 residues within 4Å: Chain H: C.7, C.10, R.63, C.65, C.66 4 PLIP interactions: 4 interactions with chain H Metal complexes: H:C.7, H:C.10, H:C.65, H:C.66 ZN.8: 4 residues within 4Å: Chain I: C.937, H.943, C.950, C.953 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:C.937, I:H.943, I:C.950, I:C.953 ZN.9: 5 residues within 4Å: Chain I: P.856, H.857, C.898, V.900, C.901 3 PLIP interactions: 3 interactions with chain I Metal complexes: I:H.857, I:C.898, I:C.901 ZN.10: 4 residues within 4Å: Chain I: C.401, H.403, C.442, C.445 3 PLIP interactions: 3 interactions with chain I Metal complexes: I:C.401, I:H.403, I:C.442

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Feng, X.Y., Regulation of early transcription and late transcript processing enzymes packaging for African swine fever virus from endogenous vRNAP-M1249L supercomplex structures. To Be Published

Release Date

2024-11-06

Peptides

DNA-directed RNA polymerase subunit: A
DNA-directed RNA polymerase subunit beta: B
DNA-directed RNA polymerase RPB3-11 homolog: C
DNA-directed RNA polymerase RPB5 homolog: D
C147L: E
D339L: F
C122R: G
DNA-directed RNA polymerase RPB10 homolog: H
M1249L: I

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
J

DNA-directed RNA polymerase subunit

DNA-directed RNA polymerase subunit beta

DNA-directed RNA polymerase RPB3-11 homolog

DNA-directed RNA polymerase RPB5 homolog

C147L

D339L

C122R

DNA-directed RNA polymerase RPB10 homolog

M1249L

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