SMTL ID : 9b18.1 (3 other biounits)

EV-D68 in complex with inhibitor Jun11-53-7

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x 01: (4M)-4-[1-(2-methoxyethyl)-1H-pyrazol-4-yl]-N-({4-[(propan-2-yl)oxy]phenyl}methyl)quinolin-8-amine

01.1: 19 residues within 4Å: Chain A: I.107, N.108, T.109, L.119, L.125, F.127, I.131, A.157, M.158, F.159, A.181, S.182, V.183, I.194, I.196, Y.205, I.229, L.232, M.253 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:I.107, A:T.109, A:I.131, A:A.157, A:F.159, A:A.181, A:I.194, A:I.196, A:I.229, A:I.229, A:L.232 Hydrogen bonds: A:T.109 pi-Stacking: A:Y.205

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, K. et al., Design of enterovirus D68 capsid inhibitors with in vivo antiviral efficacy. To Be Published

Release Date

2025-03-19

Peptides

Capsid protein VP1: A
viral protein 3: B
viral protein 2: C
Capsid protein VP4: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Capsid protein VP1

viral protein 3

viral protein 2

Capsid protein VP4

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