SMTL ID : 9ekx.1

(-)ML-SI3 bound TRPML2 in a closed state

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

4 x 01: N-[(1R,2R)-2-[4-(2-methoxyphenyl)piperazin-1-yl]cyclohexyl]benzenesulfonamide

01.1: 12 residues within 4Å: Chain A: V.417, C.421, A.424, G.425, Y.428, F.457, V.460, F.502 Chain D: Y.488, S.492, Y.496, M.497 12 PLIP interactions: 5 interactions with chain D, 7 interactions with chain A Hydrophobic interactions: D:Y.488, D:Y.496, D:Y.496, D:Y.496, A:V.417, A:Y.428, A:Y.428, A:F.457, A:V.460, A:V.460, A:F.502 Hydrogen bonds: D:S.492 01.2: 12 residues within 4Å: Chain A: Y.488, S.492, Y.496, M.497 Chain B: V.417, C.421, A.424, G.425, Y.428, F.457, V.460, F.502 12 PLIP interactions: 7 interactions with chain B, 5 interactions with chain A Hydrophobic interactions: B:V.417, B:Y.428, B:Y.428, B:F.457, B:V.460, B:V.460, B:F.502, A:Y.488, A:Y.496, A:Y.496, A:Y.496 Hydrogen bonds: A:S.492 01.3: 12 residues within 4Å: Chain B: Y.488, S.492, Y.496, M.497 Chain C: V.417, C.421, A.424, G.425, Y.428, F.457, V.460, F.502 12 PLIP interactions: 7 interactions with chain C, 5 interactions with chain B Hydrophobic interactions: C:V.417, C:Y.428, C:Y.428, C:F.457, C:V.460, C:V.460, C:F.502, B:Y.488, B:Y.496, B:Y.496, B:Y.496 Hydrogen bonds: B:S.492 01.4: 12 residues within 4Å: Chain C: Y.488, S.492, Y.496, M.497 Chain D: V.417, C.421, A.424, G.425, Y.428, F.457, V.460, F.502 12 PLIP interactions: 7 interactions with chain D, 5 interactions with chain C Hydrophobic interactions: D:V.417, D:Y.428, D:Y.428, D:F.457, D:V.460, D:V.460, D:F.502, C:Y.488, C:Y.496, C:Y.496, C:Y.496 Hydrogen bonds: C:S.492

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schmiege, P. et al., (-)ML-SI3 bound TRPML2 in a closed state. To Be Published

Release Date

2025-06-18

Peptides

Mucolipin-2: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Membrane

We predict this structure to be a membrane protein.
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Mucolipin-2

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