SMTL ID : 9el1.1

ML2-SA1/PI(3,5)P2 bound TRPML2 in an open state

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

4 x 01: (3aS,4S,7R,7aS)-3-(2,6-dichlorophenyl)-3a,4,5,6,7,7a-hexahydro-4,7-methano-1,2-benzoxazole

01.1: 9 residues within 4Å: Chain A: F.420, C.421, A.424, Y.428, F.457, F.494, L.499, F.502 Chain D: Y.496 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain D Hydrophobic interactions: A:L.499, D:Y.496 pi-Stacking: A:F.502 01.3: 9 residues within 4Å: Chain A: Y.496 Chain B: F.420, C.421, A.424, Y.428, F.457, F.494, L.499, F.502 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:L.499, A:Y.496 pi-Stacking: B:F.502 01.5: 9 residues within 4Å: Chain B: Y.496 Chain C: F.420, C.421, A.424, Y.428, F.457, F.494, L.499, F.502 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain B Hydrophobic interactions: C:L.499, B:Y.496 pi-Stacking: C:F.502 01.7: 9 residues within 4Å: Chain C: Y.496 Chain D: F.420, C.421, A.424, Y.428, F.457, F.494, L.499, F.502 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain C Hydrophobic interactions: D:L.499, C:Y.496 pi-Stacking: D:F.502

4 x EUJ: (2R)-3-{[(S)-hydroxy{[(1S,2R,3R,4S,5S,6R)-2,4,6-trihydroxy-3,5-bis(phosphonooxy)cyclohexyl]oxy}phosphoryl]oxy}propane-1,2-diyl dioctanoate(Non-covalent)

EUJ.2: 10 residues within 4Å: Chain A: F.47, K.55, W.64, K.65, L.307, R.310, S.311, L.314, Y.347, R.395 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:K.55, A:K.55, A:W.64, A:K.65, A:S.311, A:Y.347 Salt bridges: A:K.55, A:K.65, A:K.65, A:R.395 EUJ.4: 10 residues within 4Å: Chain B: F.47, K.55, W.64, K.65, L.307, R.310, S.311, L.314, Y.347, R.395 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:K.55, B:K.55, B:W.64, B:K.65, B:S.311, B:Y.347 Salt bridges: B:K.55, B:K.65, B:K.65, B:R.395 EUJ.6: 10 residues within 4Å: Chain C: F.47, K.55, W.64, K.65, L.307, R.310, S.311, L.314, Y.347, R.395 10 PLIP interactions: 10 interactions with chain C Hydrogen bonds: C:K.55, C:K.55, C:W.64, C:K.65, C:S.311, C:Y.347 Salt bridges: C:K.55, C:K.65, C:K.65, C:R.395 EUJ.8: 10 residues within 4Å: Chain D: F.47, K.55, W.64, K.65, L.307, R.310, S.311, L.314, Y.347, R.395 10 PLIP interactions: 10 interactions with chain D Hydrogen bonds: D:K.55, D:K.55, D:W.64, D:K.65, D:S.311, D:Y.347 Salt bridges: D:K.55, D:K.65, D:K.65, D:R.395

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schmiege, P. et al., ML2-SA1/PI(3,5)P2 bound TRPML2 in an open state. To Be Published

Release Date

2025-06-18

Peptides

Mucolipin-2: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Membrane

We predict this structure to be a membrane protein.
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Mucolipin-2

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