SMTL ID : 9fe2.1

Crystallographic structure of AcrB V612W with bound minocycline

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.89 Å

Oligo State

hetero-3-3-mer

Ligands

3 x MIY: (4S,4AS,5AR,12AS)-4,7-BIS(DIMETHYLAMINO)-3,10,12,12A-TETRAHYDROXY-1,11-DIOXO-1,4,4A,5,5A,6,11,12A-OCTAHYDROTETRACENE-2- CARBOXAMIDE(Non-covalent)

MIY.1: 12 residues within 4Å: Chain B: S.48, T.87, Q.176, L.177, F.178, G.179, S.180, E.273, N.274, I.277, W.612, F.615 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:F.178, B:F.615 Hydrogen bonds: B:S.48, B:T.87, B:T.87, B:G.179, B:N.274, B:N.274 Water bridges: B:N.274, B:N.274, B:I.277 Salt bridges: B:E.273 MIY.2: 12 residues within 4Å: Chain D: S.48, T.87, Q.176, L.177, F.178, G.179, S.180, E.273, N.274, I.277, W.612, F.615 12 PLIP interactions: 12 interactions with chain D Hydrophobic interactions: D:F.178, D:F.615 Hydrogen bonds: D:S.48, D:T.87, D:T.87, D:G.179, D:N.274, D:N.274 Water bridges: D:N.274, D:N.274, D:I.277 Salt bridges: D:E.273 MIY.3: 12 residues within 4Å: Chain F: S.48, T.87, Q.176, L.177, F.178, G.179, S.180, E.273, N.274, I.277, W.612, F.615 13 PLIP interactions: 13 interactions with chain F Hydrophobic interactions: F:F.178, F:F.615 Hydrogen bonds: F:S.48, F:T.87, F:T.87, F:G.179, F:E.273, F:N.274, F:N.274 Water bridges: F:N.274, F:N.274, F:I.277 Salt bridges: F:E.273

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lazarova, M. et al., Crystallographic structure of AcrB V612W with bound minocycline. To Be Published

Release Date

2025-05-28

Peptides

DARPIN: ACE
Multidrug efflux pump subunit AcrB: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

C
D

E
D

B
A

D
A

F
A

Membrane

We predict this structure to be a membrane protein.
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DARPIN

Multidrug efflux pump subunit AcrB

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