SMTL ID : 9fj4.1

Structure of ubiquitin bound to coiled coil-UIM form 1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.54 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x 01: 3-[1-(2-oxidanylideneethyl)-1,2,3-triazol-4-yl]propanal

01.1: 8 residues within 4Å: Chain B: E.1, Q.2, E.3, I.4 Chain C: K.1, Q.2, K.3, I.4 6 PLIP interactions: 4 interactions with chain C, 2 interactions with chain B Hydrophobic interactions: C:I.4 Hydrogen bonds: C:K.3, C:I.4, B:E.3, B:I.4 pi-Cation interactions: C:K.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vosbein, P. et al., An engineered ubiquitin binding coiled coil peptide. Chem Sci (2024)

Release Date

2024-09-18

Peptides

Polyubiquitin-C: A
GLU-GLN-GLU-ILE-GLU-GLU-LEU-GLU-ILE-GLU-ILE-ALA-ILE-LEU-LEU-SER-GLU-ILE-GLU-GLY: B
LYS-GLN-LYS-ILE-ALA-ALA-LEU-LYS-TYR-LYS-ILE-ALA-ALA-LEU-LYS-GLN-LYS-ILE-GLN: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Polyubiquitin-C

GLU-GLN-GLU-ILE-GLU-GLU-LEU-GLU-ILE-GLU-ILE-ALA-ILE-LEU-LEU-SER-GLU-ILE-GLU-GLY

LYS-GLN-LYS-ILE-ALA-ALA-LEU-LYS-TYR-LYS-ILE-ALA-ALA-LEU-LYS-GLN-LYS-ILE-GLN

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