SMTL ID : 9gio.1

Crystal structure of the VHL-EloC-EloB complex with a covalent compound bound to C77 of VHL.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.49 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x 3JF: N-acetyl-3-methyl-L-valyl-(4R)-4-hydroxy-N-[4-(4-methyl-1,3-thiazol-5-yl)benzyl]-L-prolinamide(Non-covalent)

3JF.1: 11 residues within 4Å: Chain C: F.23, W.35, F.38, Y.45, P.46, I.56, H.57, S.58, Y.59, H.62, W.64 13 PLIP interactions: 13 interactions with chain C Hydrophobic interactions: C:W.35, C:I.56, C:I.56, C:Y.59, C:W.64 Hydrogen bonds: C:Y.45, C:H.57, C:Y.59, C:H.62 Water bridges: C:Y.59, C:Y.59, C:Y.59 pi-Stacking: C:Y.45

1 x 01: N-[2-(dimethylsulfamoyl)-5-[(1-methylpyrazol-4-yl)methoxy]phenyl]propanamide

01.2: 5 residues within 4Å: Chain C: I.22, C.24, R.26, T.52, F.95 1 PLIP interactions: 1 interactions with chain C pi-Cation interactions: C:R.26

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lucas, S.C.C. et al., Discovery of a Series of Covalent Ligands That Bind to Cys77 of the Von Hippel Lindau Tumor Suppressor Protein (VHL). Acs Med.Chem.Lett. (2025)

Release Date

2025-03-26

Peptides

Elongin-B: A
Isoform 2 of Elongin-C: B
von Hippel-Lindau disease tumor suppressor: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Elongin-B

Isoform 2 of Elongin-C

von Hippel-Lindau disease tumor suppressor

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