SMTL ID : 9i4h.1

Factor Inhibiting HIF (FIH) in complex with manganese and 3-Hydroxy-5-(3-(4-(hydroxymethyl)-3-nitrophenyl)isoxazol-5-yl)picolinoyl)glycine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: H.200, D.202, H.280 Ligands: 01.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.200, A:D.202, A:H.280, H2O.2 MN.3: 4 residues within 4Å: Chain B: H.200, D.202, H.280 Ligands: 01.4 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.200, B:D.202, B:H.280, H2O.5

2 x 01: 2-[[5-[3-[4-(hydroxymethyl)-3-nitro-phenyl]-1,2-oxazol-5-yl]-3-oxidanyl-pyridin-2-yl]carbonylamino]ethanoic acid

01.2: 16 residues within 4Å: Chain A: Y.146, Q.148, T.184, S.185, L.189, T.197, H.200, D.202, Q.204, F.208, K.215, H.280, I.282, N.295, W.297 Ligands: MN.1 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:T.184, A:W.297 Hydrogen bonds: A:N.295 Salt bridges: A:K.215 01.4: 16 residues within 4Å: Chain B: Y.146, Q.148, T.184, S.185, L.189, T.197, H.200, D.202, Q.204, F.208, K.215, H.280, I.282, N.295, W.297 Ligands: MN.3 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:T.184, B:W.297 Hydrogen bonds: B:Y.146, B:T.184, B:N.295 Salt bridges: B:K.215

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, Y. et al., Light-Induced, Lysine-Targeting Irreversible Covalent Inhibition of the Human Oxygen Sensing Hydroxylase Factor Inhibiting HIF (FIH). J.Am.Chem.Soc. (2025)

Release Date

2025-05-21

Peptides

Hypoxia-inducible factor 1-alpha inhibitor: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Hypoxia-inducible factor 1-alpha inhibitor

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