SMTL ID : 9ji6.1

CYP105A1 R84A complexed with diclofenac (DIF)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 26 residues within 4Å: Chain A: F.95, I.96, H.103, R.107, F.114, I.159, L.240, L.241, A.244, G.245, T.248, T.249, I.290, A.291, A.294, R.297, A.347, F.348, G.349, V.352, H.353, C.355, L.356, G.357, A.361 Ligands: DIF.2 26 PLIP interactions: 26 interactions with chain A, Hydrophobic interactions: A:F.95, A:F.95, A:I.96, A:F.114, A:F.114, A:I.159, A:L.240, A:L.241, A:L.241, A:T.248, A:I.290, A:A.291, A:F.348, A:L.356, A:A.361 Water bridges: A:S.71, A:R.73, A:A.294, A:R.297 Salt bridges: A:H.103, A:R.107, A:R.297, A:H.353, A:H.353 pi-Stacking: A:F.348 Metal complexes: A:C.355

1 x DIF: 2-[2,6-DICHLOROPHENYL)AMINO]BENZENEACETIC ACID(Non-covalent)

DIF.2: 10 residues within 4Å: Chain A: R.73, I.96, V.181, I.243, A.244, T.248, I.293, A.294 Ligands: HEM.1, EDO.5 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.181, A:V.181, A:A.244, A:T.248, A:I.293, A:A.294 Water bridges: A:R.73 Salt bridges: A:R.73

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.3: 4 residues within 4Å: Chain A: H.57, E.58, R.61, H.344 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.58

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) EDO.5: 3 residues within 4Å: Chain A: R.193, L.240 Ligands: DIF.2 1 PLIP interactions: 1 interactions with chain A Water bridges: A:A.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Takita, T. et al., Structure-Function Analysis of Streptomyces griseolus CYP105A1 in the Metabolism of Nonsteroidal Anti-inflammatory Drugs. Biochemistry (2025)

Release Date

2025-04-23

Peptides

Vitamin D3 dihydroxylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Vitamin D3 dihydroxylase

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