SMTL ID : 9l8p.1

in situ structure of mtHsp60-Hsp10

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-14-14-mer

Ligands

14 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 21 residues within 4Å: Chain A: T.54, M.55, G.56, P.57, D.76, G.77, D.111, G.112, T.113, T.114, T.115, G.439, G.440, G.441, Y.503, D.504, A.505, M.506, I.518, D.520 Ligands: K.2 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:G.56, A:D.76, A:G.77, A:G.112, A:G.112, A:T.113, A:T.113, A:T.114, A:T.115, A:G.440, A:G.441, A:A.505, A:M.506, A:D.520 ATP.3: 21 residues within 4Å: Chain B: T.54, M.55, G.56, P.57, D.76, G.77, D.111, G.112, T.113, T.114, T.115, G.439, G.440, G.441, Y.503, D.504, A.505, M.506, I.518, D.520 Ligands: K.4 14 PLIP interactions: 14 interactions with chain B Hydrogen bonds: B:G.56, B:D.76, B:G.77, B:G.112, B:G.112, B:T.113, B:T.113, B:T.114, B:T.115, B:G.440, B:G.441, B:A.505, B:M.506, B:D.520 ATP.5: 21 residues within 4Å: Chain C: T.54, M.55, G.56, P.57, D.76, G.77, D.111, G.112, T.113, T.114, T.115, G.439, G.440, G.441, Y.503, D.504, A.505, M.506, I.518, D.520 Ligands: K.6 14 PLIP interactions: 14 interactions with chain C Hydrogen bonds: C:G.56, C:D.76, C:G.77, C:G.112, C:G.112, C:T.113, C:T.113, C:T.114, C:T.115, C:G.440, C:G.441, C:A.505, C:M.506, C:D.520 ATP.7: 21 residues within 4Å: Chain D: T.54, M.55, G.56, P.57, D.76, G.77, D.111, G.112, T.113, T.114, T.115, G.439, G.440, G.441, Y.503, D.504, A.505, M.506, I.518, D.520 Ligands: K.8 14 PLIP interactions: 14 interactions with chain D Hydrogen bonds: D:G.56, D:D.76, D:G.77, D:G.112, D:G.112, D:T.113, D:T.113, D:T.114, D:T.115, D:G.440, D:G.441, D:A.505, D:M.506, D:D.520 ATP.9: 21 residues within 4Å: Chain E: T.54, M.55, G.56, P.57, D.76, G.77, D.111, G.112, T.113, T.114, T.115, G.439, G.440, G.441, Y.503, D.504, A.505, M.506, I.518, D.520 Ligands: K.10 14 PLIP interactions: 14 interactions with chain E Hydrogen bonds: E:G.56, E:D.76, E:G.77, E:G.112, E:G.112, E:T.113, E:T.113, E:T.114, E:T.115, E:G.440, E:G.441, E:A.505, E:M.506, E:D.520 ATP.11: 21 residues within 4Å: Chain F: T.54, M.55, G.56, P.57, D.76, G.77, D.111, G.112, T.113, T.114, T.115, G.439, G.440, G.441, Y.503, D.504, A.505, M.506, I.518, D.520 Ligands: K.12 14 PLIP interactions: 14 interactions with chain F Hydrogen bonds: F:G.56, F:D.76, F:G.77, F:G.112, F:G.112, F:T.113, F:T.113, F:T.114, F:T.115, F:G.440, F:G.441, F:A.505, F:M.506, F:D.520 ATP.13: 21 residues within 4Å: Chain G: T.54, M.55, G.56, P.57, D.76, G.77, D.111, G.112, T.113, T.114, T.115, G.439, G.440, G.441, Y.503, D.504, A.505, M.506, I.518, D.520 Ligands: K.14 14 PLIP interactions: 14 interactions with chain G Hydrogen bonds: G:G.56, G:D.76, G:G.77, G:G.112, G:G.112, G:T.113, G:T.113, G:T.114, G:T.115, G:G.440, G:G.441, G:A.505, G:M.506, G:D.520 ATP.15: 21 residues within 4Å: Chain H: T.54, M.55, G.56, P.57, D.76, G.77, D.111, G.112, T.113, T.114, T.115, G.439, G.440, G.441, Y.503, D.504, A.505, M.506, I.518, D.520 Ligands: K.16 16 PLIP interactions: 16 interactions with chain H Hydrogen bonds: H:T.54, H:G.56, H:D.76, H:D.76, H:G.77, H:G.112, H:G.112, H:T.113, H:T.114, H:T.114, H:T.115, H:G.440, H:G.441, H:A.505, H:M.506, H:D.520 ATP.17: 21 residues within 4Å: Chain I: T.54, M.55, G.56, P.57, D.76, G.77, D.111, G.112, T.113, T.114, T.115, G.439, G.440, G.441, Y.503, D.504, A.505, M.506, I.518, D.520 Ligands: K.18 15 PLIP interactions: 15 interactions with chain I Hydrogen bonds: I:G.56, I:D.76, I:D.76, I:G.77, I:G.112, I:G.112, I:T.113, I:T.114, I:T.114, I:T.115, I:G.440, I:G.441, I:A.505, I:M.506, I:D.520 ATP.19: 21 residues within 4Å: Chain J: T.54, M.55, G.56, P.57, D.76, G.77, D.111, G.112, T.113, T.114, T.115, G.439, G.440, G.441, Y.503, D.504, A.505, M.506, I.518, D.520 Ligands: K.20 15 PLIP interactions: 15 interactions with chain J Hydrogen bonds: J:G.56, J:D.76, J:D.76, J:G.77, J:G.112, J:G.112, J:T.113, J:T.114, J:T.114, J:T.115, J:G.440, J:G.441, J:A.505, J:M.506, J:D.520 ATP.21: 21 residues within 4Å: Chain K: T.54, M.55, G.56, P.57, D.76, G.77, D.111, G.112, T.113, T.114, T.115, G.439, G.440, G.441, Y.503, D.504, A.505, M.506, I.518, D.520 Ligands: K.22 15 PLIP interactions: 15 interactions with chain K Hydrogen bonds: K:G.56, K:D.76, K:D.76, K:G.77, K:G.112, K:G.112, K:T.113, K:T.114, K:T.114, K:T.115, K:G.440, K:G.441, K:A.505, K:M.506, K:D.520 ATP.23: 21 residues within 4Å: Chain L: T.54, M.55, G.56, P.57, D.76, G.77, D.111, G.112, T.113, T.114, T.115, G.439, G.440, G.441, Y.503, D.504, A.505, M.506, I.518, D.520 Ligands: K.24 15 PLIP interactions: 15 interactions with chain L Hydrogen bonds: L:G.56, L:D.76, L:D.76, L:G.77, L:G.112, L:G.112, L:T.113, L:T.114, L:T.114, L:T.115, L:G.440, L:G.441, L:A.505, L:M.506, L:D.520 ATP.25: 21 residues within 4Å: Chain M: T.54, M.55, G.56, P.57, D.76, G.77, D.111, G.112, T.113, T.114, T.115, G.439, G.440, G.441, Y.503, D.504, A.505, M.506, I.518, D.520 Ligands: K.26 15 PLIP interactions: 15 interactions with chain M Hydrogen bonds: M:G.56, M:D.76, M:D.76, M:G.77, M:G.112, M:G.112, M:T.113, M:T.114, M:T.114, M:T.115, M:G.440, M:G.441, M:A.505, M:M.506, M:D.520 ATP.27: 21 residues within 4Å: Chain N: T.54, M.55, G.56, P.57, D.76, G.77, D.111, G.112, T.113, T.114, T.115, G.439, G.440, G.441, Y.503, D.504, A.505, M.506, I.518, D.520 Ligands: K.28 15 PLIP interactions: 15 interactions with chain N Hydrogen bonds: N:G.56, N:D.76, N:D.76, N:G.77, N:G.112, N:G.112, N:T.113, N:T.114, N:T.114, N:T.115, N:G.440, N:G.441, N:A.505, N:M.506, N:D.520

14 x K: POTASSIUM ION(Non-covalent)

K.2: 5 residues within 4Å: Chain A: T.54, M.55, K.75, T.114 Ligands: ATP.1 No protein-ligand interaction detected (PLIP) K.4: 5 residues within 4Å: Chain B: T.54, M.55, K.75, T.114 Ligands: ATP.3 No protein-ligand interaction detected (PLIP) K.6: 5 residues within 4Å: Chain C: T.54, M.55, K.75, T.114 Ligands: ATP.5 No protein-ligand interaction detected (PLIP) K.8: 5 residues within 4Å: Chain D: T.54, M.55, K.75, T.114 Ligands: ATP.7 No protein-ligand interaction detected (PLIP) K.10: 5 residues within 4Å: Chain E: T.54, M.55, K.75, T.114 Ligands: ATP.9 No protein-ligand interaction detected (PLIP) K.12: 5 residues within 4Å: Chain F: T.54, M.55, K.75, T.114 Ligands: ATP.11 No protein-ligand interaction detected (PLIP) K.14: 5 residues within 4Å: Chain G: T.54, M.55, K.75, T.114 Ligands: ATP.13 No protein-ligand interaction detected (PLIP) K.16: 5 residues within 4Å: Chain H: T.54, M.55, K.75, T.114 Ligands: ATP.15 No protein-ligand interaction detected (PLIP) K.18: 5 residues within 4Å: Chain I: T.54, M.55, K.75, T.114 Ligands: ATP.17 No protein-ligand interaction detected (PLIP) K.20: 5 residues within 4Å: Chain J: T.54, M.55, K.75, T.114 Ligands: ATP.19 No protein-ligand interaction detected (PLIP) K.22: 5 residues within 4Å: Chain K: T.54, M.55, K.75, T.114 Ligands: ATP.21 No protein-ligand interaction detected (PLIP) K.24: 5 residues within 4Å: Chain L: T.54, M.55, K.75, T.114 Ligands: ATP.23 No protein-ligand interaction detected (PLIP) K.26: 5 residues within 4Å: Chain M: T.54, M.55, K.75, T.114 Ligands: ATP.25 No protein-ligand interaction detected (PLIP) K.28: 5 residues within 4Å: Chain N: T.54, M.55, K.75, T.114 Ligands: ATP.27 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jung, M. et al., Ribosome from rattus norvegicus hippocampal primary neuron. To Be Published

Release Date

2025-10-01

Peptides

60 kDa heat shock protein, mitochondrial: ABCDEFGHIJKLMN
10 kDa heat shock protein, mitochondrial: OPQRSTUVWXYZ01

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
G

C
F

D
E

E
D

F
C

G
B

H
J

I
I

J
H

K
N

L
Y

M
L

N
K

O
O

P
U

Q
T

R
S

S
R

T
Q

U
P

V
X

W
W

X
V

Y
2

Z
1

0
Z

1
M

60 kDa heat shock protein, mitochondrial

10 kDa heat shock protein, mitochondrial

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