SMTL ID : 9mo0.1

Cryo-EM structure of human MPC in complex with AKOS005153046

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 2.83 Å

Oligo State

hetero-1-1-1-1-1-1-mer

Ligands

1 x 01: (~{E})-2-cyano-3-[5-(2-nitrophenyl)furan-2-yl]prop-2-enoic acid

01.1: 11 residues within 4Å: Chain D: K.49, W.82, Y.85, L.96, N.100 Chain E: N.33, F.66, F.69, V.73, L.80, H.84 11 PLIP interactions: 4 interactions with chain E, 7 interactions with chain D Hydrophobic interactions: E:F.66, E:V.73, D:L.96 Hydrogen bonds: E:N.33, D:K.49, D:K.49, D:N.100 Salt bridges: E:H.84, D:K.49 pi-Stacking: D:W.82, D:Y.85

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

He, Z. et al., Structure of mitochondrial pyruvate carrier and its inhibition mechanism. Nature (2025)

Release Date

2025-03-05

Peptides

Fab_8D3_2 heavy chain: A
Fab_8D3_2 light chain: B
Nanobody: C
Mitochondrial pyruvate carrier 2: D
Mitochondrial pyruvate carrier 1: E
MBP-PrA/G: F

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

C
C

D
B

E
A

F
F

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Fab_8D3_2 heavy chain

Fab_8D3_2 light chain

Nanobody

Mitochondrial pyruvate carrier 2

Mitochondrial pyruvate carrier 1

MBP-PrA/G

Related Entries With Identical Sequence