SMTL ID : 9nnj.1

Crystal structure of CYP46A1 with 3-chloro-N-[(3M)-3-(1,3-oxazol-5-yl)phenyl]-N-(propan-2-yl)benzene-1-sulfonamide (compound 2)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.29 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 27 residues within 4Å: Chain A: K.84, Y.89, L.105, V.106, W.114, R.118, F.125, F.279, A.282, G.283, T.286, S.287, H.290, A.347, T.350, P.409, F.410, S.411, R.415, S.416, C.417, I.418, G.419, F.422, A.423 Ligands: 01.2, EDO.3 16 PLIP interactions: 16 interactions with chain A, Hydrophobic interactions: A:V.106, A:F.125, A:F.279, A:A.282, A:F.410, A:I.418, A:F.422 Hydrogen bonds: A:Y.89, A:T.350 Water bridges: A:K.84, A:K.84 Salt bridges: A:K.84, A:K.84, A:R.118, A:R.415 Metal complexes: A:C.417

1 x 01: 3-chloro-N-[(3M)-3-(1,3-oxazol-5-yl)phenyl]-N-(propan-2-yl)benzene-1-sulfonamide

01.2: 12 residues within 4Å: Chain A: Y.89, I.202, A.282, T.286, P.346, A.347, W.348, G.349, F.351, A.454, T.455 Ligands: HEM.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Y.89, A:I.202, A:A.347, A:T.455 Hydrogen bonds: A:T.286, A:W.348, A:G.349

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 10 residues within 4Å: Chain A: A.347, W.348, G.349, T.350, F.373, S.374, T.375, F.408, S.411 Ligands: HEM.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:W.348, A:T.375, A:F.408

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ito, Y. et al., Design and identification of brain-penetrant, potent, and selective 1,3-oxazole-based cholesterol 24-hydroxylase (CH24H) inhibitors. Bioorg.Med.Chem. (2025)

Release Date

2025-04-23

Peptides

Cholesterol 24-hydroxylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cholesterol 24-hydroxylase

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