SMTL ID : 9qad.3 (2 other biounits)

Crystal structure of the SMARCA2 bromodomain bound to a tricyclic pyrimidoindolone inhibitor (compound 17)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.08 Å

Oligo State

monomer

Ligands

1 x 01: 5-oxidanyl-2-(phenylmethyl)-1,9-dihydropyrimido[4,5-b]indol-4-one

01.1: 12 residues within 4Å: Chain A: V.38, F.39, Q.41, L.42, P.43, Y.51, V.59, N.89, A.90, F.93, N.94, I.100 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.38, A:L.42, A:P.43, A:Y.51, A:I.100 Hydrogen bonds: A:Y.51, A:N.94 pi-Stacking: A:F.39

1 x ZN: ZINC ION

ZN.2: 1 residues within 4Å: Chain A: H.88 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.88, H2O.1, H2O.1, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Boerth, J.A. et al., Discovery of Pyrimidoindolones as Novel Family VIII Bromodomain Binders. Acs Med.Chem.Lett. (2025)

Release Date

2025-05-14

Peptides

Probable global transcription activator SNF2L2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Probable global transcription activator SNF2L2

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