- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-6-1-6-14-mer
- Ligands
- 4 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)(Covalent)
- 6 x AGS: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER(Non-covalent)(Covalent)
AGS.2: 17 residues within 4Å:- Chain H: R.332
- Chain I: D.180, P.181, V.182, I.183, R.185, P.210, G.211, V.212, G.213, K.214, T.215, A.216, I.350, L.354, I.392
- Ligands: MG.4
15 PLIP interactions:13 interactions with chain I, 2 interactions with chain H- Hydrogen bonds: I:D.180, I:D.180, I:I.183, I:I.183, I:G.211, I:V.212, I:G.213, I:K.214, I:K.214, I:T.215, I:T.215, I:A.216
- Salt bridges: I:K.214, H:R.332, H:R.332
AGS.5: 20 residues within 4Å:- Chain I: A.329, R.332, R.333
- Chain J: D.180, P.181, V.182, I.183, R.185, P.210, G.211, V.212, G.213, K.214, T.215, A.216, T.316, I.350, L.354, I.392
- Ligands: MG.7
17 PLIP interactions:12 interactions with chain J, 5 interactions with chain I- Hydrogen bonds: J:D.180, J:D.180, J:I.183, J:I.183, J:G.211, J:V.212, J:G.213, J:K.214, J:K.214, J:T.215, J:A.216, I:R.332, I:R.333, I:R.333
- Salt bridges: J:K.214, I:R.332, I:R.332
AGS.6: 21 residues within 4Å:- Chain I: D.635, E.700, R.704
- Chain J: R.509, V.510, I.511, P.546, T.547, G.548, V.549, G.550, K.551, T.552, E.553, L.714, I.722, M.725, M.726, A.762, R.763
- Ligands: MG.8
16 PLIP interactions:15 interactions with chain J, 1 interactions with chain I- Hydrogen bonds: J:I.511, J:T.547, J:G.548, J:V.549, J:V.549, J:G.550, J:K.551, J:K.551, J:T.552, J:T.552, J:T.552, J:E.553, I:R.704
- Salt bridges: J:K.551, J:R.763, J:R.763
AGS.9: 19 residues within 4Å:- Chain J: A.305, R.306, A.329, R.332, R.333
- Chain K: D.180, P.181, E.209, P.210, G.211, V.212, G.213, K.214, T.215, A.216, E.219, T.316, L.354
- Ligands: MG.11
17 PLIP interactions:6 interactions with chain J, 11 interactions with chain K- Hydrogen bonds: J:R.306, J:R.332, J:R.333, J:R.333, K:D.180, K:G.211, K:V.212, K:G.213, K:K.214, K:K.214, K:T.215, K:T.215, K:A.216, K:E.219
- Salt bridges: J:R.332, J:R.332, K:K.214
AGS.10: 20 residues within 4Å:- Chain J: E.700, R.704
- Chain K: R.509, V.510, I.511, P.546, T.547, G.548, V.549, G.550, K.551, T.552, E.553, E.618, I.722, M.725, A.762, R.763, I.766
- Ligands: MG.12
22 PLIP interactions:20 interactions with chain K, 2 interactions with chain J- Hydrogen bonds: K:I.511, K:T.547, K:G.548, K:V.549, K:V.549, K:G.550, K:K.551, K:K.551, K:T.552, K:T.552, K:E.553, K:E.553, K:E.618, K:E.618, K:R.763, K:R.763, J:R.704, J:R.704
- Salt bridges: K:K.551, K:K.551, K:R.763, K:R.763
AGS.14: 18 residues within 4Å:- Chain K: R.704
- Chain L: R.509, V.510, I.511, T.547, G.548, V.549, G.550, K.551, T.552, E.553, E.618, I.722, M.725, A.762, R.763, I.766
- Ligands: MG.15
16 PLIP interactions:2 interactions with chain K, 14 interactions with chain L- Hydrogen bonds: K:R.704, K:R.704, L:I.511, L:I.511, L:G.548, L:G.550, L:K.551, L:T.552, L:T.552, L:E.553, L:E.553, L:E.618, L:R.763
- Salt bridges: L:K.551, L:R.763, L:R.763
- 7 x MG: MAGNESIUM ION(Non-covalent)
MG.4: 3 residues within 4Å:- Chain I: T.215, D.279
- Ligands: AGS.2
2 PLIP interactions:2 interactions with chain I- Metal complexes: I:T.215, I:D.279
MG.7: 3 residues within 4Å:- Chain J: T.215, D.279
- Ligands: AGS.5
3 PLIP interactions:3 interactions with chain J- Metal complexes: J:T.215, J:D.279, J:D.279
MG.8: 3 residues within 4Å:- Chain I: D.635
- Chain J: R.763
- Ligands: AGS.6
2 PLIP interactions:2 interactions with chain I- Metal complexes: I:D.635, I:D.635
MG.11: 4 residues within 4Å:- Chain K: T.215, D.279, E.280
- Ligands: AGS.9
3 PLIP interactions:3 interactions with chain K- Metal complexes: K:T.215, K:D.279, K:D.279
MG.12: 4 residues within 4Å:- Chain K: T.552, D.617, E.618
- Ligands: AGS.10
1 PLIP interactions:1 interactions with chain K- Metal complexes: K:T.552
MG.15: 5 residues within 4Å:- Chain L: T.552, D.617, E.618, T.657
- Ligands: AGS.14
2 PLIP interactions:2 interactions with chain L- Metal complexes: L:T.552, L:D.617
MG.16: 3 residues within 4Å:- Chain L: T.215, D.279
- Ligands: ADP.13
2 PLIP interactions:2 interactions with chain L- Metal complexes: L:T.215, L:D.279
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Azinas, S. et al., Structure of the central Staphylococcus aureus AAA+ protease MecA/ClpC/ClpP. To Be Published
- Release Date
- 2025-09-10
- Peptides
- Adapter protein MecA: ABCDEF
unknown substrate: G
ATP-dependent Clp protease ATP-binding subunit ClpC: HIJKLM
ATP-dependent Clp protease proteolytic subunit: NOPQRSTUVWXYZ0 - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
SH
aI
bJ
cK
dL
eM
fN
GO
HP
IQ
JR
KS
LT
MU
NV
OW
PX
QY
RZ
T0
U
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-6-1-6-14-mer
- Ligands
- 4 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)(Covalent)
- 6 x AGS: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER(Non-covalent)(Covalent)
- 7 x MG: MAGNESIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Azinas, S. et al., Structure of the central Staphylococcus aureus AAA+ protease MecA/ClpC/ClpP. To Be Published
- Release Date
- 2025-09-10
- Peptides
- Adapter protein MecA: ABCDEF
unknown substrate: G
ATP-dependent Clp protease ATP-binding subunit ClpC: HIJKLM
ATP-dependent Clp protease proteolytic subunit: NOPQRSTUVWXYZ0 - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
SH
aI
bJ
cK
dL
eM
fN
GO
HP
IQ
JR
KS
LT
MU
NV
OW
PX
QY
RZ
T0
U