SMTL ID : 9y76.1 (1 other biounit)

Crystal structure of the human DCAF1 WDR domain in complex with OICR-40120

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.56 Å

Oligo State

monomer

Ligands

1 x 01: (4P,5M)-N-[(1S)-3-amino-1-(3-chloro-4-fluorophenyl)-3-oxopropyl]-4-(4-chloro-2-fluorophenyl)-5-{1-[2-(morpholin-4-yl)ethyl]-1H-pyrazol-4-yl}-1H-pyrrole-3-carboxamide

01.1: 20 residues within 4Å: Chain A: T.64, H.65, A.79, T.80, H.105, Y.106, R.150, R.223, V.224, V.225, Y.234, G.235, A.236, L.238, P.254, F.255, I.279, F.280, D.281, L.282 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:Y.106, A:R.223, A:R.223, A:V.225, A:L.238, A:P.254, A:F.255 Hydrogen bonds: A:R.223, A:D.281, A:D.281 Water bridges: A:C.24, A:R.150 pi-Stacking: A:F.255 Halogen bonds: A:R.150

1 x UNX: UNKNOWN LIGAND(Non-functional Binders)

UNX.2: 2 residues within 4Å: Chain A: R.277, R.310 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

kimani, S. et al., Crystal structure of the human DCAF1 WDR domain in complex with OICR-40120. To be published

Release Date

2025-10-15

Peptides

DDB1- and CUL4-associated factor 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DDB1- and CUL4-associated factor 1

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