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Papain-like protease nsp3 | P0DTD1 PRO_0000449621

Created: Nov. 24, 2021 at 13:31

Model Results

Order by:
Oligo-State Ligands GMQE QMEANDisCo Global
Monomer (matching prediction)1 x ZN0.140.80 ± 0.05
QMEANDisCo LocalQMEAN Z-Scores
TemplateSeq IdentityCoverageDescription
6w9c.1.A100.00%
Non-structural protein 3
The crystal structure of papain-like protease of SARS CoV-2

Model-Template Alignment

Oligo-State Ligands GMQE QMEANDisCo Global
Monomer 1 x ACE-UB4-DPP-GLY-GVE, 1 x ZN0.140.79 ± 0.05
QMEANDisCo LocalQMEAN Z-Scores
TemplateSeq IdentityCoverageDescription
6wuu.2.A99.69%
Non-structural protein 3
Crystal structure of the SARS CoV-2 Papain-like protease in complex with peptide inhibitor VIR250

Model-Template Alignment

Oligo-State Ligands GMQE QMEANDisCo Global
Monomer 1 x TTT, 1 x ZN0.140.80 ± 0.05
QMEANDisCo LocalQMEAN Z-Scores
TemplateSeq IdentityCoverageDescription
3e9s.1.A82.86%
Non-structural protein 3
A new class of papain-like protease/deubiquitinase inhibitors blocks SARS virus replication

Model-Template Alignment

Oligo-State Ligands GMQE QMEANDisCo Global
Monomer 1 x TTT, 1 x ZN0.140.80 ± 0.05
QMEANDisCo LocalQMEAN Z-Scores
TemplateSeq IdentityCoverageDescription
3e9s.1.A82.86%
Non-structural protein 3
A new class of papain-like protease/deubiquitinase inhibitors blocks SARS virus replication

Model-Template Alignment

Oligo-State Ligands GMQE QMEANDisCo Global
Monomer 1 x TTT, 1 x ZN0.140.80 ± 0.05
QMEANDisCo LocalQMEAN Z-Scores
TemplateSeq IdentityCoverageDescription
7cmd.4.A100.00%
Non-structural protein 3
Crystal structure of the SARS-CoV-2 PLpro with GRL0617

Model-Template Alignment

Oligo-State Ligands GMQE QMEANDisCo Global
Monomer (matching prediction) None 0.130.79 ± 0.05
QMEANDisCo LocalQMEAN Z-Scores
TemplateSeq IdentityCoverageDescription
2w2g.1.A75.00%
NON-STRUCTURAL PROTEIN 3
HUMAN SARS CORONAVIRUS UNIQUE DOMAIN

Model-Template Alignment

Oligo-State Ligands GMQE QMEANDisCo Global
Monomer None 0.090.84 ± 0.07
QMEANDisCo LocalQMEAN Z-Scores
TemplateSeq IdentityCoverageDescription
6ywk.3.A100.00%
NSP3 macrodomain
Crystal structure of SARS-CoV-2 (Covid-19) NSP3 macrodomain in complex with HEPES

Model-Template Alignment

Oligo-State Ligands GMQE QMEANDisCo Global
Monomer None 0.070.76 ± 0.07
QMEANDisCo LocalQMEAN Z-Scores
TemplateSeq IdentityCoverageDescription
2kqv.1.A78.13%
Non-structural protein 3
SARS coronavirus-unique domain (SUD): Three-domain molecular architecture in solution and RNA binding. I: Structure of the SUD-M domain of SUD-MC

Model-Template Alignment

Oligo-State Ligands GMQE QMEANDisCo Global
Monomer None 0.050.69 ± 0.08
QMEANDisCo LocalQMEAN Z-Scores
TemplateSeq IdentityCoverageDescription
2k87.1.A81.74%
Non-structural protein 3 of Replicase polyprotein 1a
NMR STRUCTURE OF A PUTATIVE RNA BINDING PROTEIN (SARS1) FROM SARS CORONAVIRUS

Model-Template Alignment

Oligo-State Ligands GMQE QMEANDisCo Global
Monomer None 0.050.70 ± 0.11
QMEANDisCo LocalQMEAN Z-Scores
TemplateSeq IdentityCoverageDescription
2kqw.1.A80.22%
Non-structural protein 3
SARS coronavirus-unique domain (SUD): Three-domain molecular architecture in solution and RNA binding. II: Structure of the SUD-C domain of SUD-MC

Model-Template Alignment

Oligo-State Ligands GMQE QMEANDisCo Global
Monomer None 0.030.71 ± 0.08
QMEANDisCo LocalQMEAN Z-Scores
TemplateSeq IdentityCoverageDescription
2idy.1.A78.50%
NSP3
NMR Structure of the SARS-CoV non-structural protein nsp3a

Model-Template Alignment