A0A0L8VGZ0 | SWISS-MODEL Repository

A0A0L8VGZ0 (A0A0L8VGZ0_9SACH) Saccharomyces boulardii (nom inval)

DNA-directed RNA polymerases I and III subunit RPAC1 UniProtKB InterPro Interactive Modelling

335 aa; Sequence (Fasta) ; 5 identical sequences: Saccharomyces cerevisiae: N1NWG0, G2WPS7, C7GXS2, P07703, A6ZWZ1

It is possible new templates exist for this target since these models were created.

However, an attempt to improve models for this target was made on 2025-06-08. The outcome - failed for technical reasons.

Available Structures

61 Experimental Structures

Description	PDB ID	Oligo-state	Range	Seq id (%)	Ligands
Yeast RNA polymerase III natural open complex (nOC)	6cnd PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04051; P07703; P13393; P17890; P20434; P20435; P20436; P22139; P22276; P25441; P28000; P29056; P32349; P32910; P35718; P36121; P40422; P46678; P47076; Q04307;	1-335	100	7×ZN;
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Yeast RNA polymerase III elongation complex	6cnf PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04051; P07703; P13393; P17890; P20434; P20435; P20436; P22139; P22276; P25441; P28000; P29056; P32349; P32910; P35718; P36121; P40422; P46678; P47076; Q04307;	1-335	100	7×ZN;
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Structure of yeast RNA Polymerase III-Ty1 integrase complex at 2.6 A (focus subunit AC40).	7z0h PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04051; P07703; P17890; P20434; P20435; P20436; P22139; P22276; P25441; P28000; P32349; P32910; P35718; P36121; P40422; P47076; Q04307; Q07163;	1-335	100	7×ZN; 2×MG;
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Structure of yeast RNA Polymerase III elongation complex at 3.3 A	8bws PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04051; P07703; P17890; P20434; P20435; P20436; P22139; P22276; P25441; P28000; P32349; P32910; P35718; P36121; P40422; P47076; Q04307;	1-335	100	6×ZN; 1×MG; 3×4QM;
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Structure of yeast RNA Polymerase III-DNA-Ty1 integrase complex (Pol III-DNA-IN1) at 3.1 A	7z2z PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04051; P07703; P17890; P20434; P20435; P20436; P22139; P22276; P25441; P28000; P32349; P32910; P35718; P36121; P40422; P47076; Q04307; Q07163;	1-335	100	7×ZN; 2×MG; 1×4QM;
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RNA Polymerase III open pre-initiation complex (OC-PIC)	6eu0 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04051; P07703; P13393; P17890; P20434; P20435; P20436; P22139; P22276; P25441; P28000; P29056; P32349; P32910; P35718; P36121; P40422; P46678; P47076; Q04307;	1-335	100	7×ZN; 1×MG;
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RNA Polymerase III - open DNA complex (OC-POL3).	6eu1 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04051; P07703; P17890; P20434; P20435; P20436; P22139; P22276; P25441; P28000; P32349; P32910; P35718; P36121; P40422; P47076; Q04307;	1-335	100	6×ZN; 1×MG;
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Apo RNA Polymerase III - open conformation (oPOL3)	6eu2 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04051; P07703; P17890; P20434; P20435; P20436; P22139; P22276; P25441; P28000; P32349; P32910; P35718; P36121; P40422; P47076; Q04307;	1-335	100	6×ZN; 1×MG;
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RNA Polymerase III closed complex CC1.	6f42 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04051; P07703; P13393; P17890; P20434; P20435; P20436; P22139; P22276; P25441; P28000; P29056; P32349; P32910; P35718; P36121; P40422; P46678; P47076; Q04307;	1-335	100	7×ZN;
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Structure of yeast RNA Polymerase III-Ty1 integrase complex at 2.7 A (focus subunit C11, no C11 C-t…	7z31 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04051; P07703; P17890; P20434; P20435; P20436; P22139; P22276; P25441; P28000; P32349; P32910; P35718; P36121; P40422; P47076; Q04307; Q12414;	1-335	100	6×ZN; 1×MG;
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Structure of yeast RNA Polymerase III-Ty1 integrase complex at 2.9 A (focus subunit C11 terminal Zn…	7z30 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04051; P07703; P17890; P20434; P20435; P20436; P22139; P22276; P25441; P28000; P32349; P32910; P35718; P36121; P40422; P47076; Q04307; Q07163;	1-335	100	7×ZN; 2×MG;
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Apo RNA Polymerase III - closed conformation (cPOL3)	6eu3 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04051; P07703; P17890; P20434; P20435; P20436; P22139; P22276; P25441; P28000; P32349; P32910; P35718; P36121; P40422; P47076; Q04307;	1-335	100	6×ZN; 1×MG;
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Yeast RNA polymerase III initial transcribing complex	6cnb PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04051; P07703; P13393; P17890; P20434; P20435; P20436; P22139; P22276; P25441; P28000; P29056; P32349; P32910; P35718; P36121; P40422; P46678; P47076; Q04307;	1-335	100	7×ZN;
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Yeast RNA polymerase III open complex	6cnc PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04051; P07703; P13393; P17890; P20434; P20435; P20436; P22139; P22276; P25441; P28000; P29056; P32349; P32910; P35718; P36121; P40422; P46678; P47076; Q04307;	1-335	100	7×ZN;
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RNA Polymerase III open complex	6f40 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04051; P07703; P13393; P17890; P20434; P20435; P20436; P22139; P22276; P25441; P28000; P29056; P32349; P32910; P35718; P36121; P40422; P46678; P47076; Q04307;	1-335	100	7×ZN;
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Cryo-EM structure of yeast RNA polymerase III elongation complex at 3. 9 A	5fj8 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04051; P07703; P17890; P20434; P20435; P20436; P22139; P22276; P25441; P28000; P32349; P32910; P35718; P36121; P40422; P47076; Q04307;	1-335	100	6×ZN;
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RNA Polymerase III closed complex CC2.	6f44 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04051; P07703; P13393; P17890; P20434; P20435; P20436; P22139; P22276; P25441; P28000; P29056; P32349; P32910; P35718; P36121; P40422; P46678; P47076; Q04307;	1-335	100	7×ZN;
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RNA Polymerase III initially transcribing complex	6f41 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04051; P07703; P13393; P17890; P20434; P20435; P20436; P22139; P22276; P25441; P28000; P29056; P32349; P32910; P35718; P36121; P40422; P46678; P47076; Q04307;	1-335	100	7×ZN;
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Cryo-EM structure of yeast apo RNA polymerase III at 4.6 A	5fj9 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04051; P07703; P17890; P20434; P20435; P20436; P22139; P22276; P25441; P28000; P32349; P32910; P35718; P36121; P40422; P47076; Q04307;	1-335	100	6×ZN;
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Cryo-EM structure of yeast RNA polymerase III at 4.7 A	5fja PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04051; P07703; P17890; P20434; P20435; P20436; P22139; P22276; P25441; P28000; P32349; P32910; P35718; P36121; P40422; P47076; Q04307;	1-335	100	6×ZN;
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Structure of yeast RNA Polymerase III Pre-Termination Complex (PTC)	7z1l PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04051; P07703; P17890; P20434; P20435; P20436; P22139; P22276; P25441; P28000; P32349; P32910; P35718; P36121; P40422; P47076; Q04307;	2-335	100	7×ZN; 1×MG; 2×4QM;
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Structure of yeast RNA Polymerase III Elongation Complex (EC)	7z1m PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04051; P07703; P17890; P20434; P20435; P20436; P22139; P22276; P25441; P28000; P32349; P32910; P35718; P36121; P40422; P47076; Q04307;	2-335	100	7×ZN; 1×MG; 2×4QM;
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Structure of yeast RNA Polymerase III Delta C53-C37-C11	7z1n PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04051; P07703; P17890; P20434; P20435; P20436; P22139; P22276; P28000; P32349; P32910; P35718; P40422; P47076;	2-335	100	5×ZN; 1×MG; 2×1N7;
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Structure of yeast RNA Polymerase III PTC + NTPs	7z1o PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04051; P07703; P17890; P20434; P20435; P20436; P22139; P22276; P25441; P28000; P32349; P32910; P35718; P36121; P40422; P47076; Q04307;	2-335	100	7×ZN; 1×MG; 2×1N7;
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Cryo-EM structure of the RNA Polymerase III-Maf1 complex	6tut PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04051; P07703; P17890; P20434; P20435; P20436; P22139; P22276; P25441; P28000; P32349; P32910; P35718; P36121; P40422; P41910; P47076; Q04307;	2-335	100	7×ZN;
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Structure of 14-subunit RNA polymerase I at 3.0 A resolution, crystal form C2-100	4c3i PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P07703; P10964; P20434; P20435; P20436; P22138; P22139; P28000; P32529; P40422; P46669; P47006; P50106; Q01080;	30-335	100.0	3×SO4; 7×ZN; 1×MG; 1×MPD;
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Structure of 14-subunit RNA polymerase I at 3.27 A resolution, crystal form C2-93	4c3h PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P07703; P10964; P20434; P20435; P20436; P22138; P22139; P28000; P32529; P40422; P46669; P47006; P50106; Q01080;	30-335	100.0	7×ZN;
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Structure of 14-subunit RNA polymerase I at 3.35 A resolution, crystal form C2-90	4c3j PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P07703; P10964; P20434; P20435; P20436; P22138; P22139; P28000; P32529; P40422; P46669; P47006; P50106; Q01080;	30-335	100.0	7×ZN;
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RNA polymerase I Initial Transcribing Complex State 3	5w66 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P07703; P10964; P20434; P20435; P20436; P22138; P22139; P28000; P32529; P32786; P40422; P40992; P46669; P47006; P50106; Q01080; Q04712;	30-335	100	6×ZN;
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RNA Polymerase I Pre-initiation complex DNA opening intermediate 1	6rrd PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P07703; P10964; P20434; P20435; P20436; P22138; P22139; P28000; P32529; P32786; P36070; P40422; P40992; P46669; P47006; P50106; Q01080; Q04712;	30-335	100.0	1×ZN;
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RNA Polymerase I Open Complex conformation 2	6rwe PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P07703; P10964; P20434; P20435; P20436; P22138; P22139; P28000; P32529; P32786; P36070; P40422; P40992; P46669; P47006; P50106; Q01080; Q04712;	30-335	100.0	8×ZN;
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RNA Polymerase I Closed Conformation 1 (CC1)	6rqh PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P07703; P10964; P20434; P20435; P20436; P22138; P22139; P28000; P32529; P32786; P36070; P40422; P40992; P46669; P47006; P50106; Q01080; Q04712;	30-335	100.0
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RNA Polymerase I Pre-initiation complex DNA opening intermediate 2	6rui PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P07703; P10964; P20434; P20435; P20436; P22138; P22139; P28000; P32529; P32786; P36070; P40422; P40992; P46669; P47006; P50106; Q01080; Q04712;	30-335	100.0	1×ZN;
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RNA Polymerase I Closed Conformation 2 (CC2)	6rql PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P07703; P10964; P20434; P20435; P20436; P22138; P22139; P28000; P32529; P32786; P36070; P40422; P40992; P46669; P47006; P50106; Q01080; Q04712;	30-335	100.0
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RNA Polymerase I Open Complex conformation 1	6ruo PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P07703; P10964; P20434; P20435; P20436; P22138; P22139; P28000; P32529; P32786; P36070; P40422; P40992; P46669; P47006; P50106; Q01080; Q04712;	30-335	100.0	8×ZN;
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RNA Polymerase I-tWH-Rrn3-DNA	6rqt PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P07703; P10964; P20434; P20435; P20436; P22138; P22139; P28000; P32529; P36070; P40422; P46669; P47006; P50106; Q01080;	30-335	100.0	6×ZN;
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RNA Polymerase I open complex	5m5w PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P07703; P10964; P20434; P20435; P20436; P22138; P22139; P28000; P32529; P40422; P46669; P47006; P50106; Q01080;	30-335	100.0	7×ZN;
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RNA Polymerase I elongation complex 1	5m5x PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P07703; P10964; P20434; P20435; P20436; P22138; P22139; P28000; P32529; P40422; P46669; P47006; P50106; Q01080;	30-335	100.0	6×ZN;
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Monomeric RNA polymerase I at 4.9 A resolution	5lmx PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P07703; P10964; P20434; P20435; P20436; P22138; P22139; P28000; P32529; P40422; P46669; P47006; P50106; Q01080;	30-335	100.0	6×ZN;
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RNA Polymerase I elongation complex 2	5m5y PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P07703; P10964; P20434; P20435; P20436; P22138; P22139; P28000; P32529; P40422; P46669; P47006; P50106; Q01080;	30-335	100.0	6×ZN;
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RNA polymerase I Initial Transcribing Complex	5w5y PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P07703; P10964; P20434; P20435; P20436; P22138; P22139; P28000; P32529; P32786; P40422; P40992; P46669; P47006; P50106; Q01080; Q04712;	30-335	100	6×ZN;
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RNA polymerase I pre-initiation complex	5oa1 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P07703; P10964; P20434; P20435; P20436; P22138; P22139; P28000; P32529; P32786; P36070; P40422; P40992; P46669; P47006; P50106; Q01080; Q04712;	30-335	100.0	7×ZN;
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Yeast RNA polymerase I elongation complex stalled by cyclobutane pyrimidine dimer (CPD)	6h67 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P07703; P10964; P20434; P20435; P20436; P22138; P22139; P28000; P32529; P40422; P46669; P47006; P50106; Q01080;	30-335	100	6×ZN; 1×MG;
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RNA Polymerase I elongation complex with A49 tandem winged helix domain	5m64 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P07703; P10964; P20434; P20435; P20436; P22138; P22139; P28000; P32529; P40422; P46669; P47006; P50106; Q01080;	30-335	100.0	6×ZN;
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RNA Polymerase I Initial Transcribing Complex State 1	5w64 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P07703; P10964; P20434; P20435; P20436; P22138; P22139; P28000; P32529; P32786; P40422; P40992; P46669; P47006; P50106; Q01080; Q04712;	30-335	100	6×ZN;
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RNA polymerase I Initial Transcribing Complex State 2	5w65 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P07703; P10964; P20434; P20435; P20436; P22138; P22139; P28000; P32529; P32786; P40422; P40992; P46669; P47006; P50106; Q01080; Q04712;	30-335	100	7×ZN;
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Yeast RNA polymerase I elongation complex stalled by cyclobutane pyrimidine dimer (CPD) with fully-…	6h68 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P07703; P10964; P20434; P20435; P20436; P22138; P22139; P28000; P32529; P40422; P46669; P47006; P50106; Q01080;	30-335	100	6×ZN;
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Structure of RNA polymerase I at 2.8 A resolution	4c2m PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P07703; P10964; P20434; P20435; P20436; P22138; P22139; P28000; P32529; P40422; P46669; P47006; P50106; Q01080;	31-335	100	7×ZN; 1×SO4;
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Yeast RNA polymerase I elongation complex at 3.8A	5m3f PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P07703; P10964; P20434; P20435; P20436; P22138; P22139; P28000; P32529; P40422; P46669; P47006; P50106; Q01080;	31-335	100	6×ZN; 1×MG; 1×SO4;
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Free monomeric RNA polymerase I at 4.0A resolution	5m3m PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P07703; P10964; P20434; P20435; P20436; P22138; P22139; P28000; P32529; P40422; P46669; P47006; P50106; Q01080;	31-335	100	7×ZN; 1×SO4;
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early intermediate RNA Polymerase I Pre-initiation complex - eiPIC	6tps PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P07703; P10964; P20434; P20435; P20436; P22138; P22139; P28000; P32529; P32786; P36070; P40422; P40992; P46669; P47006; P50106; Q01080; Q04712;	31-335	100	7×ZN; 1×MG;
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Cryo-EM structure of RNA polymerase I in complex with Rrn3 and Core Factor (Orientation III)	5n5y PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P07703; P10964; P20434; P20435; P20436; P22138; P22139; P28000; P32529; P32786; P36070; P40422; P40992; P46669; P47006; P50106; Q01080; Q04712;	31-335	100	8×ZN; 5×SO4; 1×MG;
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Cryo-EM structure of RNA polymerase I in complex with Rrn3 and Core Factor (Orientation II)	5n5z PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P07703; P10964; P20434; P20435; P20436; P22138; P22139; P28000; P32529; P32786; P36070; P40422; P40992; P46669; P47006; P50106; Q01080; Q04712;	31-335	100	8×ZN;
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Cryo-EM structure of RNA polymerase I in complex with Rrn3 and Core Factor (Orientation I)	5n60 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P07703; P10964; P20434; P20435; P20436; P22138; P22139; P28000; P32529; P32786; P36070; P40422; P40992; P46669; P47006; P50106; Q01080; Q04712;	31-335	100	8×ZN;
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RNA polymerase I initially transcribing complex	5n61 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P07703; P10964; P20434; P20435; P20436; P22138; P22139; P28000; P32529; P32786; P36070; P40422; P40992; P46669; P47006; P50106; Q01080; Q04712;	31-335	100	7×ZN; 1×MG; 1×SO4;
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RNA polymerase I-Rrn3 complex at 4.8 A resolution	5g5l PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P07703; P10964; P20434; P20435; P20436; P22138; P22139; P28000; P32529; P36070; P40422; P46669; P47006; P50106; Q01080;	31-335	100	7×ZN;
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RNA polymerase I structure with an alternative dimer hinge	4ym7 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P07703; P10964; P20434; P20435; P20436; P22138; P22139; P28000; P32529; P40422; P46669; P47006; P50106; Q01080;	31-334	100	7×ZN;
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Yeast RNA polymerase I elongation complex bound to nucleotide analog GMPCPP	6hko PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P07703; P10964; P20434; P20435; P20436; P22138; P22139; P28000; P32529; P40422; P46669; P47006; P50106; Q01080;	30-333	100	1×MG; 6×ZN; 1×G2P;
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Yeast RNA polymerase I* elongation complex bound to nucleotide analog GMPCPP	6hlq PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P07703; P10964; P20434; P20435; P20436; P22138; P22139; P28000; P32529; P40422; P46669; P50106;	30-333	100	7×ZN; 1×MG; 1×G2P;
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Yeast RNA polymerase I elongation complex bound to nucleotide analog GMPCPP (core focused)	6hlr PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P07703; P10964; P20434; P20435; P20436; P22138; P22139; P28000; P32529; P40422; P46669; P50106;	30-333	100	1×MG; 6×ZN; 1×G2P;
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Yeast apo RNA polymerase I*	6hls PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P07703; P10964; P20434; P20435; P20436; P22138; P22139; P28000; P32529; P40422; P46669; P50106;	30-333	100	7×ZN;
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1 SWISS-MODEL model

	Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
	7z1m.1.C	monomer	0.86	2-335		100.00
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	Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

	Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

A0A0L8VGZ0 (A0A0L8VGZ0_9SACH) Saccharomyces boulardii (nom inval)

DNA-directed RNA polymerases I and III subunit RPAC1 UniProtKBInterProInteractive Modelling

Available Structures

61 Experimental Structures

1 SWISS-MODEL model

Alignments

Background

Resolution

DNA-directed RNA polymerases I and III subunit RPAC1 UniProtKB InterPro Interactive Modelling