SMTL ID : 6ruo.1

RNA Polymerase I Open Complex conformation 1

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

8 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: T.12, D.13, N.14 Chain F: R.6 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:T.12, A:D.13 ZN.2: 5 residues within 4Å: Chain C: G.55, C.62, T.64, C.65, H.75 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:C.62, C:C.65, C:H.75 ZN.3: 4 residues within 4Å: Chain C: C.105, C.233, N.235, C.236 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:C.105, C:C.233, C:C.236 ZN.4: 5 residues within 4Å: Chain D: C.1107, S.1109, T.1112, C.1128, R.1130 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:C.1107, D:S.1109, D:T.1112 ZN.5: 4 residues within 4Å: Chain K: C.10, C.13, C.30, C.33 2 PLIP interactions: 2 interactions with chain K Metal complexes: K:C.13, K:C.30 ZN.6: 5 residues within 4Å: Chain K: C.86, C.89, N.91, C.114, C.117 3 PLIP interactions: 3 interactions with chain K Metal complexes: K:C.86, K:C.89, K:C.117 ZN.7: 4 residues within 4Å: Chain L: C.7, C.10, C.45, C.46 4 PLIP interactions: 4 interactions with chain L Metal complexes: L:C.7, L:C.10, L:C.45, L:C.46 ZN.8: 5 residues within 4Å: Chain N: C.31, C.34, S.36, C.48, C.51 4 PLIP interactions: 4 interactions with chain N Metal complexes: N:C.31, N:C.34, N:C.48, N:C.51

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sadian, Y. et al., Molecular insight into RNA polymerase I promoter recognition and promoter melting. Nat Commun (2019)

Release Date

2019-12-11

Peptides

RNA polymerase I-specific transcription initiation factor RRN7: A
DNA-directed RNA polymerase I subunit RPA49: B
DNA-directed RNA polymerase I subunit RPA190: C
DNA-directed RNA polymerase I subunit RPA135: D
DNA-directed RNA polymerases I and III subunit RPAC1: E
DNA-directed RNA polymerase I subunit RPA14: F
DNA-directed RNA polymerases I, II, and III subunit RPABC1: G
DNA-directed RNA polymerases I, II, and III subunit RPABC2: H
DNA-directed RNA polymerase I subunit RPA43: I
DNA-directed RNA polymerases I, II, and III subunit RPABC3: J
DNA-directed RNA polymerase I subunit RPA12: K
DNA-directed RNA polymerases I, II, and III subunit RPABC5: L
DNA-directed RNA polymerases I and III subunit RPAC2: M
DNA-directed RNA polymerases I, II, and III subunit RPABC4: N
DNA-directed RNA polymerase I subunit RPA34: O
RNA polymerase I-specific transcription initiation factor RRN3: P
RNA polymerase I-specific transcription initiation factor RRN6: Q
RNA polymerase I-specific transcription initiation factor RRN11: R

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
Q

B
M

C
A

D
B

E
C

F
D

G
E

H
F

I
G

J
H

K
I

L
J

M
K

N
L

O
N

P
O

Q
S

R
R

RNA polymerase I-specific transcription initiation factor RRN7

DNA-directed RNA polymerase I subunit RPA49

DNA-directed RNA polymerase I subunit RPA190

DNA-directed RNA polymerase I subunit RPA135

DNA-directed RNA polymerases I and III subunit RPAC1

DNA-directed RNA polymerase I subunit RPA14

DNA-directed RNA polymerases I, II, and III subunit RPABC1

DNA-directed RNA polymerases I, II, and III subunit RPABC2

DNA-directed RNA polymerase I subunit RPA43

DNA-directed RNA polymerases I, II, and III subunit RPABC3

DNA-directed RNA polymerase I subunit RPA12

DNA-directed RNA polymerases I, II, and III subunit RPABC5

DNA-directed RNA polymerases I and III subunit RPAC2

DNA-directed RNA polymerases I, II, and III subunit RPABC4

DNA-directed RNA polymerase I subunit RPA34

RNA polymerase I-specific transcription initiation factor RRN3

RNA polymerase I-specific transcription initiation factor RRN6

RNA polymerase I-specific transcription initiation factor RRN11

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