SMTL ID : 6rwe.1

RNA Polymerase I Open Complex conformation 2

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

8 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain D: G.55, C.62, C.65, C.72, H.75 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:C.62, D:C.65 ZN.2: 5 residues within 4Å: Chain D: C.102, C.105, C.233, C.236, M.238 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.102, D:C.105, D:C.233, D:C.236 ZN.3: 4 residues within 4Å: Chain E: C.1104, C.1107, C.1128, C.1131 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:C.1104, E:C.1107, E:C.1128, E:C.1131 ZN.4: 4 residues within 4Å: Chain L: C.10, C.13, C.30, C.33 3 PLIP interactions: 3 interactions with chain L Metal complexes: L:C.10, L:C.13, L:C.30 ZN.5: 5 residues within 4Å: Chain L: C.86, C.89, N.91, C.114, C.117 4 PLIP interactions: 4 interactions with chain L Metal complexes: L:C.86, L:C.89, L:C.114, L:C.117 ZN.6: 4 residues within 4Å: Chain M: C.7, C.10, C.45, C.46 3 PLIP interactions: 3 interactions with chain M Metal complexes: M:C.7, M:C.10, M:C.45 ZN.7: 4 residues within 4Å: Chain O: C.31, C.34, C.48, C.51 4 PLIP interactions: 4 interactions with chain O Metal complexes: O:C.31, O:C.34, O:C.48, O:C.51 ZN.8: 4 residues within 4Å: Chain R: C.10, N.14, C.29, H.33 2 PLIP interactions: 2 interactions with chain R Metal complexes: R:C.10, R:C.29

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sadian, Y. et al., Molecular insight into RNA polymerase I promoter recognition and promoter melting. Nat Commun (2019)

Release Date

2019-12-11

Peptides

DNA-directed RNA polymerase I subunit RPA49: C
DNA-directed RNA polymerase I subunit RPA190: D
DNA-directed RNA polymerase I subunit RPA135: E
DNA-directed RNA polymerases I and III subunit RPAC1: F
DNA-directed RNA polymerase I subunit RPA14: G
DNA-directed RNA polymerases I, II, and III subunit RPABC1: H
DNA-directed RNA polymerases I, II, and III subunit RPABC2: I
DNA-directed RNA polymerase I subunit RPA43: J
DNA-directed RNA polymerases I, II, and III subunit RPABC3: K
DNA-directed RNA polymerase I subunit RPA12: L
DNA-directed RNA polymerases I, II, and III subunit RPABC5: M
DNA-directed RNA polymerases I and III subunit RPAC2: N
DNA-directed RNA polymerases I, II, and III subunit RPABC4: O
DNA-directed RNA polymerase I subunit RPA34: P
RNA polymerase I-specific transcription initiation factor RRN3: Q
RNA polymerase I-specific transcription initiation factor RRN7: R
RNA polymerase I-specific transcription initiation factor RRN6: S
RNA polymerase I-specific transcription initiation factor RRN11: T

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
M

D
A

E
B

F
C

G
D

H
E

I
F

J
G

K
H

L
I

M
J

N
K

O
L

P
N

Q
O

R
Q

S
S

T
R

DNA-directed RNA polymerase I subunit RPA49

DNA-directed RNA polymerase I subunit RPA190

DNA-directed RNA polymerase I subunit RPA135

DNA-directed RNA polymerases I and III subunit RPAC1

DNA-directed RNA polymerase I subunit RPA14

DNA-directed RNA polymerases I, II, and III subunit RPABC1

DNA-directed RNA polymerases I, II, and III subunit RPABC2

DNA-directed RNA polymerase I subunit RPA43

DNA-directed RNA polymerases I, II, and III subunit RPABC3

DNA-directed RNA polymerase I subunit RPA12

DNA-directed RNA polymerases I, II, and III subunit RPABC5

DNA-directed RNA polymerases I and III subunit RPAC2

DNA-directed RNA polymerases I, II, and III subunit RPABC4

DNA-directed RNA polymerase I subunit RPA34

RNA polymerase I-specific transcription initiation factor RRN3

RNA polymerase I-specific transcription initiation factor RRN7

RNA polymerase I-specific transcription initiation factor RRN6

RNA polymerase I-specific transcription initiation factor RRN11

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