SMTL ID : 6rrd.1

RNA Polymerase I Pre-initiation complex DNA opening intermediate 1

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain C: T.12, N.14, H.33 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:T.12, C:H.33

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sadian, Y. et al., Molecular insight into RNA polymerase I promoter recognition and promoter melting. Nat Commun (2019)

Release Date

2019-12-11

Peptides

RNA polymerase I-specific transcription initiation factor RRN7: C
RNA polymerase I-specific transcription initiation factor RRN6: D
RNA polymerase I-specific transcription initiation factor RRN11: E
DNA-directed RNA polymerase I subunit RPA12: F
DNA-directed RNA polymerase I subunit RPA34: G
DNA-directed RNA polymerase I subunit RPA49: H
DNA-directed RNA polymerase I subunit RPA190: I
DNA-directed RNA polymerase I subunit RPA135: J
DNA-directed RNA polymerases I and III subunit RPAC1: K
DNA-directed RNA polymerase I subunit RPA14: L
DNA-directed RNA polymerases I, II, and III subunit RPABC1: M
DNA-directed RNA polymerases I, II, and III subunit RPABC2: N
DNA-directed RNA polymerase I subunit RPA43: O
DNA-directed RNA polymerases I, II, and III subunit RPABC3: P
DNA-directed RNA polymerases I, II, and III subunit RPABC5: Q
DNA-directed RNA polymerases I and III subunit RPAC2: R
DNA-directed RNA polymerases I, II, and III subunit RPABC4: S
RNA polymerase I-specific transcription initiation factor RRN3: T

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
Q

D
S

E
R

F
I

G
N

H
M

I
A

J
B

K
C

L
D

M
E

N
F

O
G

P
H

Q
J

R
K

S
L

T
O

RNA polymerase I-specific transcription initiation factor RRN7

RNA polymerase I-specific transcription initiation factor RRN6

RNA polymerase I-specific transcription initiation factor RRN11

DNA-directed RNA polymerase I subunit RPA12

DNA-directed RNA polymerase I subunit RPA34

DNA-directed RNA polymerase I subunit RPA49

DNA-directed RNA polymerase I subunit RPA190

DNA-directed RNA polymerase I subunit RPA135

DNA-directed RNA polymerases I and III subunit RPAC1

DNA-directed RNA polymerase I subunit RPA14

DNA-directed RNA polymerases I, II, and III subunit RPABC1

DNA-directed RNA polymerases I, II, and III subunit RPABC2

DNA-directed RNA polymerase I subunit RPA43

DNA-directed RNA polymerases I, II, and III subunit RPABC3

DNA-directed RNA polymerases I, II, and III subunit RPABC5

DNA-directed RNA polymerases I and III subunit RPAC2

DNA-directed RNA polymerases I, II, and III subunit RPABC4

RNA polymerase I-specific transcription initiation factor RRN3

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