B3LFY5 (B3LFY5_YEAS1) Saccharomyces cerevisiae (strain RM11-1a) (Baker's yeast)
RNA polymerase II transcription factor B subunit 1 UniProtKBInterProInteractive Modelling
642 aa; Sequence (Fasta) ;
9 identical sequences: Saccharomyces cerevisiae: N1P6V8, G2WB49, C8Z5M2, C7GQW1, P32776, B5VGJ1, A6ZYQ9; Saccharomyces boulardii: A0A0L8VTG8; Saccharomyces cerevisiae x Saccharomyces kudriavzevii: H0GED9
It is possible new templates exist for this target since these models were created.
Available Structures
37 Experimental Structures
| Description | PDB ID | Oligo-state | Range | Seq id (%) | Ligands | |
|---|---|---|---|---|---|---|
| Yeast RNA polymerase II transcription pre-initiation complex with core Mediator and the +1 nucleoso… |
Heteromer P02281; P04050; P06839; P06897; P08518; P13393; P16370; P19263; P20433; P20434; P20435; P20436; P22139; P25046; P27999; P29055; P32569; P32570; P32585; P32773; P32774; P32776; P33308; P34087; P34162; P36100; P36145; P38304; P38633; P38782; P38902; P40422; P41895; P41896; P47822; P62799; P84233; Q00578; Q02939; Q03290; Q04673; Q06213; Q08278; Q12004; Q12321; Q12343; Q3E7C1; Q99278; | 100.0 | 1×SF4; 17×ZN; 1×MG; | |||
| Yeast RNA polymerase II transcription pre-initiation complex with the +1 nucleosome and NTP (comple… |
Heteromer P02281; P04050; P06839; P06897; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; P62799; P84233; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1; | 100.0 | 17×ZN; 1×MG; 1×SF4; | |||
| Yeast RNA polymerase II transcription pre-initiation complex with open promoter DNA |
Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1; | 100.0 | 1×SF4; 17×ZN; 1×BEF; 2×MG; 1×ADP; | |||
| Yeast RNA polymerase II transcription pre-initiation complex (consensus) |
Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1; | 100.0 | 1×SF4; 17×ZN; 1×BEF; 2×MG; 1×ADP; | |||
| Yeast TFIIH in the expanded state within the pre-initiation complex |
Heteromer P04050; P06839; P08518; P20433; P20435; P32776; P34087; P36100; P36145; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1; | 100.0 | 1×SF4; 11×ZN; 1×BEF; 1×MG; 1×ADP; | |||
| Yeast RNA polymerase II transcription pre-initiation complex with the +1 nucleosome (complex A) |
Heteromer P02281; P04050; P06839; P06897; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; P62799; P84233; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1; | 100.0 | 17×ZN; 1×MG; 1×SF4; | |||
| Yeast RNA polymerase II transcription pre-initiation complex with closed promoter DNA |
Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1; | 100.0 | 1×SF4; 17×ZN; 1×BEF; 2×MG; 1×ADP; | |||
| Yeast RNA polymerase II transcription pre-initiation complex with initial transcription bubble |
Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1; | 100.0 | 1×SF4; 17×ZN; 1×BEF; 2×MG; 1×ADP; | |||
| Yeast TFIIH in the contracted state within the pre-initiation complex |
Heteromer P04050; P06839; P08518; P20433; P20435; P32776; P34087; P36100; P36145; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1; | 100.0 | 1×SF4; 10×ZN; 1×BEF; 1×MG; 1×ADP; | |||
| Yeast RNA polymerase II transcription pre-initiation complex with closed distorted promoter DNA |
Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1; | 100.0 | 1×SF4; 17×ZN; 1×BEF; 2×MG; 1×ADP; | |||
| Yeast RNA polymerase II transcription pre-initiation complex with the +1 nucleosome and NTP, comple… |
Heteromer P02281; P04050; P06839; P06897; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; P62799; P84233; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1; | 100.0 | 17×ZN; 1×MG; 1×SF4; | |||
| STRUCTURE OF YEAST TRANSCRIPTION PRE-INITIATION COMPLEX WITH TFIIH AND CORE MEDIATOR |
Heteromer P04050; P06839; P08518; P13393; P16370; P19263; P20433; P20434; P20435; P20436; P22139; P25046; P27999; P29055; P32569; P32570; P32585; P32773; P32774; P32776; P33308; P34087; P34162; P36100; P36145; P38304; P38633; P38782; P38902; P40422; P41895; P41896; P47822; Q00578; Q02939; Q03290; Q04673; Q06213; Q08278; Q12004; Q12343; Q3E7C1; Q99278; | 93.85 | 16×ZN; 1×MG; 1×SF4; | |||
| STRUCTURE OF YEAST TRANSCRIPTION PRE-INITIATION COMPLEX WITH TFIIH |
Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1; | 86.85 | 16×ZN; 1×MG; 1×SF4; | |||
| Structure of a yeast closed complex with distorted DNA (CCdist) |
Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1; | 86.85 | 1×SF4; 16×ZN; 1×MG; | |||
| Yeast RNA polymerase II transcription pre-initiation complex with core Mediator |
Heteromer P04050; P06839; P08518; P13393; P16370; P19263; P20433; P20434; P20435; P20436; P22139; P25046; P27999; P29055; P32569; P32570; P32585; P32773; P32774; P32776; P33308; P34087; P34162; P36100; P36145; P38304; P38633; P38782; P38902; P40422; P41895; P41896; P47822; Q00578; Q02939; Q03290; Q04673; Q06213; Q08278; Q12004; Q12321; Q12343; Q3E7C1; Q99278; | 100.0 | 1×SF4; 17×ZN; 1×MG; | |||
| Structure of TFIIH/Rad4-Rad23-Rad33/DNA in DNA opening |
Heteromer P06839; P14736; P32776; Q00578; Q02939; Q04231; Q04673; Q12004; Q3E7C1; | 100.0 | 2×CA; 1×SF4; 5×ZN; | |||
| Composite map of PIC_delta_TFIIK form2 |
Heteromer P04050; P06839; P07273; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q04673; Q12004; Q3E7C1; | 100.0 | 15×ZN; 2×MG; 1×SF4; | |||
| Composite map of PICdeltaTFIIK form1 |
Heteromer P04050; P06839; P07273; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q04673; Q12004; Q3E7C1; | 100.0 | 1×SF4; 15×ZN; 2×MG; | |||
| consensus map of PICdeltaTFIIK form1 |
Heteromer P04050; P06839; P07273; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q04673; Q12004; Q3E7C1; | 100.0 | 1×SF4; 15×ZN; 2×MG; | |||
| Consensus map of PICdeltaTFIIK form2 |
Heteromer P04050; P06839; P07273; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q04673; Q12004; Q3E7C1; | 100.0 | 15×ZN; 2×MG; 1×SF4; | |||
| RNA polymerase II pre-initiation complex (PIC1) |
Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1; | 69.63 | 17×ZN; 1×MG; 1×SF4; | |||
| RNA polymerase II pre-initiation complex (PIC3) |
Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1; | 69.11 | 17×ZN; 1×MG; 1×SF4; | |||
| RNA polymerase II pre-initiation complex (PIC2) |
Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1; | 69.11 | 19×ZN; 1×SF4; 1×MG; | |||
| Nucleotide Excision Repair complex TFIIH Rad4-33 |
Heteromer P06839; P14736; P32776; Q00578; Q02939; Q04231; Q04673; Q12004; Q3E7C1; | 100.0 | 1×SF4; 5×ZN; 2×CA; | |||
| General transcription factor TFIIH (weak binding) |
Heteromer P06839; P32776; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1; | 69.11 | 7×ZN; 1×SF4; | |||
| Structure of TFIIH in TFIIH/Rad4-Rad23-Rad33 DNA opening complex |
Heteromer P06839; P32776; Q00578; Q02939; Q04673; Q12004; Q3E7C1; | 100.0 | 5×ZN; 1×SF4; | |||
| RNA polymerase II initially transcribing complex (ITC) |
Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1; | 69.11 | 15×ZN; 1×MG; 1×SF4; | |||
| NMR structure of the complex between the PH domain of the Tfb1 subunit from TFIIH and the activatio… |
Heteromer P04637; P32776; | 99.13 | ||||
| NMR structure of the complex between the C-terminal domain of the Rift Valley fever virus protein N… |
Heteromer P21698; P32776; | 99.13 | ||||
| NMR Structure of the complex between Tfb1 subunit of TFIIH and the activation domain of VP16 |
Heteromer P04486; P32776; | 99.13 | ||||
| Structural Characterization of a Complex Between the Acidic Transactivation Domain of EBNA2 and the… |
Heteromer P12978; P32776; | 99.13 | ||||
| NMR structure of the complex between the PH domain of the Tfb1 subunit from TFIIH and Rad4 |
Heteromer P14736; P32776; | 100 | ||||
| NMR structure of the complex between the PH domain of the Tfb1 subunit from TFIIH and the N-termina… |
Heteromer P32776; Q13351; | 100 | ||||
| NMR structure of the complex between the PH domain of the Tfb1 subunit from TFIIH and the transacti… |
Heteromer P32776; Q04206; | 100 | ||||
| NMR Structure of the complex between the Tfb1 subunit of TFIIH and the activation domain of EKLF |
Heteromer P32776; Q13351; | 100 | ||||
| NMR structure of the complex between the PH domain of the Tfb1 subunit from TFIIH and Rad2 |
Heteromer P07276; P32776; | 100 | ||||
| NMR structure of the amino-terminal domain from the Tfb1 subunit of yeast TFIIH | monomer | 99.13 | ||||
2 SWISS-MODEL models
| Template | Oligo-state | QMEAN | Range | Ligands | Trg-Tpl Seq id (%) | |
|---|---|---|---|---|---|---|
| 7o4k.1.B | monomer | 0.65 | 100.00 | |||
| 7ml1.1.A | monomer | 0.55 | 79.34 | |||