B3LP88 | SWISS-MODEL Repository

B3LP88 (B3LP88_YEAS1) Saccharomyces cerevisiae (strain RM11-1a) (Baker's yeast)

RNA polymerase A 49 kDa alpha subunit UniProtKB InterPro Interactive Modelling

415 aa; Sequence (Fasta) ; 9 identical sequences: Saccharomyces cerevisiae: N1P524, G2WLL8, C8ZFY9, C7GPB3, Q01080, B5VQG1, A0A7I9G2N8; Saccharomyces pastorianus: A0A6C1DZ12; Saccharomyces boulardii: A0A0L8VI96

It is possible new templates exist for this target since these models were created.

Available Structures

35 Experimental Structures

Description	PDB ID	Oligo-state	Range	Ligands
RNA Polymerase I elongation complex with A49 tandem winged helix domain	5m64 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P07703; P10964; P20434; P20435; P20436; P22138; P22139; P28000; P32529; P40422; P46669; P47006; P50106; Q01080;	8-403	6×ZN;
Assess
Yeast RNA polymerase I elongation complex stalled by cyclobutane pyrimidine dimer (CPD) with fully-…	6h68 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P07703; P10964; P20434; P20435; P20436; P22138; P22139; P28000; P32529; P40422; P46669; P47006; P50106; Q01080;	8-403	6×ZN;
Assess
RNA Polymerase I-tWH-Rrn3-DNA	6rqt SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P07703; P10964; P20434; P20435; P20436; P22138; P22139; P28000; P32529; P36070; P40422; P46669; P47006; P50106; Q01080;	8-403	6×ZN;
Assess
RNA polymerase I Initial Transcribing Complex State 3	5w66 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P07703; P10964; P20434; P20435; P20436; P22138; P22139; P28000; P32529; P32786; P40422; P40992; P46669; P47006; P50106; Q01080; Q04712;	8-403	6×ZN;
Assess
RNA Polymerase I Open Complex conformation 2	6rwe SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P07703; P10964; P20434; P20435; P20436; P22138; P22139; P28000; P32529; P32786; P36070; P40422; P40992; P46669; P47006; P50106; Q01080; Q04712;	8-401	8×ZN;
Assess
Yeast RNA polymerase I elongation complex bound to nucleotide analog GMPCPP	6hko SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P07703; P10964; P20434; P20435; P20436; P22138; P22139; P28000; P32529; P40422; P46669; P47006; P50106; Q01080;	8-144	1×MG; 6×ZN; 1×G2P;
Assess
RNA polymerase I structure with an alternative dimer hinge	4ym7 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P07703; P10964; P20434; P20435; P20436; P22138; P22139; P28000; P32529; P40422; P46669; P47006; P50106; Q01080;	7-115	7×ZN;
Assess
Structure of RNA polymerase I at 2.8 A resolution	4c2m SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P07703; P10964; P20434; P20435; P20436; P22138; P22139; P28000; P32529; P40422; P46669; P47006; P50106; Q01080;	8-115	7×ZN; 1×SO4;
Assess
RNA Polymerase I Pre-initiation complex DNA opening intermediate 1	6rrd SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P07703; P10964; P20434; P20435; P20436; P22138; P22139; P28000; P32529; P32786; P36070; P40422; P40992; P46669; P47006; P50106; Q01080; Q04712;	8-115	1×ZN;
Assess
Cryo-EM structure of RNA polymerase I in complex with Rrn3 and Core Factor (Orientation III)	5n5y SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P07703; P10964; P20434; P20435; P20436; P22138; P22139; P28000; P32529; P32786; P36070; P40422; P40992; P46669; P47006; P50106; Q01080; Q04712;	8-115	8×ZN; 5×SO4; 1×MG;
Assess
Cryo-EM structure of RNA polymerase I in complex with Rrn3 and Core Factor (Orientation I)	5n60 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P07703; P10964; P20434; P20435; P20436; P22138; P22139; P28000; P32529; P32786; P36070; P40422; P40992; P46669; P47006; P50106; Q01080; Q04712;	8-115	8×ZN;
Assess
Yeast RNA polymerase I elongation complex stalled by cyclobutane pyrimidine dimer (CPD)	6h67 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P07703; P10964; P20434; P20435; P20436; P22138; P22139; P28000; P32529; P40422; P46669; P47006; P50106; Q01080;	8-115	6×ZN; 1×MG;
Assess
Cryo-EM structure of RNA polymerase I in complex with Rrn3 and Core Factor (Orientation II)	5n5z SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P07703; P10964; P20434; P20435; P20436; P22138; P22139; P28000; P32529; P32786; P36070; P40422; P40992; P46669; P47006; P50106; Q01080; Q04712;	8-115	8×ZN;
Assess
RNA polymerase I initially transcribing complex	5n61 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P07703; P10964; P20434; P20435; P20436; P22138; P22139; P28000; P32529; P32786; P36070; P40422; P40992; P46669; P47006; P50106; Q01080; Q04712;	8-115	7×ZN; 1×MG; 1×SO4;
Assess
RNA Polymerase I Pre-initiation complex DNA opening intermediate 2	6rui SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P07703; P10964; P20434; P20435; P20436; P22138; P22139; P28000; P32529; P32786; P36070; P40422; P40992; P46669; P47006; P50106; Q01080; Q04712;	8-115	1×ZN;
Assess
Yeast RNA polymerase I elongation complex at 3.8A	5m3f SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P07703; P10964; P20434; P20435; P20436; P22138; P22139; P28000; P32529; P40422; P46669; P47006; P50106; Q01080;	8-115	6×ZN; 1×MG; 1×SO4;
Assess
Structure of 14-subunit RNA polymerase I at 3.0 A resolution, crystal form C2-100	4c3i SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P07703; P10964; P20434; P20435; P20436; P22138; P22139; P28000; P32529; P40422; P46669; P47006; P50106; Q01080;	8-114	3×SO4; 7×ZN; 1×MG; 1×MPD;
Assess
Structure of 14-subunit RNA polymerase I at 3.27 A resolution, crystal form C2-93	4c3h SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P07703; P10964; P20434; P20435; P20436; P22138; P22139; P28000; P32529; P40422; P46669; P47006; P50106; Q01080;	8-114	7×ZN;
Assess
Structure of 14-subunit RNA polymerase I at 3.35 A resolution, crystal form C2-90	4c3j SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P07703; P10964; P20434; P20435; P20436; P22138; P22139; P28000; P32529; P40422; P46669; P47006; P50106; Q01080;	8-114	7×ZN;
Assess
RNA polymerase I pre-initiation complex	5oa1 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P07703; P10964; P20434; P20435; P20436; P22138; P22139; P28000; P32529; P32786; P36070; P40422; P40992; P46669; P47006; P50106; Q01080; Q04712;	8-114	7×ZN;
Assess
RNA Polymerase I Closed Conformation 1 (CC1)	6rqh SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P07703; P10964; P20434; P20435; P20436; P22138; P22139; P28000; P32529; P32786; P36070; P40422; P40992; P46669; P47006; P50106; Q01080; Q04712;	8-114
Assess
RNA Polymerase I open complex	5m5w SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P07703; P10964; P20434; P20435; P20436; P22138; P22139; P28000; P32529; P40422; P46669; P47006; P50106; Q01080;	8-114	7×ZN;
Assess
RNA Polymerase I Closed Conformation 2 (CC2)	6rql SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P07703; P10964; P20434; P20435; P20436; P22138; P22139; P28000; P32529; P32786; P36070; P40422; P40992; P46669; P47006; P50106; Q01080; Q04712;	8-114
Assess
RNA Polymerase I Open Complex conformation 1	6ruo SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P07703; P10964; P20434; P20435; P20436; P22138; P22139; P28000; P32529; P32786; P36070; P40422; P40992; P46669; P47006; P50106; Q01080; Q04712;	8-114	8×ZN;
Assess
Monomeric RNA polymerase I at 4.9 A resolution	5lmx SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P07703; P10964; P20434; P20435; P20436; P22138; P22139; P28000; P32529; P40422; P46669; P47006; P50106; Q01080;	8-114	6×ZN;
Assess
RNA Polymerase I Initial Transcribing Complex State 1	5w64 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P07703; P10964; P20434; P20435; P20436; P22138; P22139; P28000; P32529; P32786; P40422; P40992; P46669; P47006; P50106; Q01080; Q04712;	8-113	6×ZN;
Assess
RNA polymerase I Initial Transcribing Complex	5w5y SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P07703; P10964; P20434; P20435; P20436; P22138; P22139; P28000; P32529; P32786; P40422; P40992; P46669; P47006; P50106; Q01080; Q04712;	8-113	6×ZN;
Assess
RNA polymerase I Initial Transcribing Complex State 2	5w65 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P07703; P10964; P20434; P20435; P20436; P22138; P22139; P28000; P32529; P32786; P40422; P40992; P46669; P47006; P50106; Q01080; Q04712;	8-113	7×ZN;
Assess
early intermediate RNA Polymerase I Pre-initiation complex - eiPIC	6tps SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P07703; P10964; P20434; P20435; P20436; P22138; P22139; P28000; P32529; P32786; P36070; P40422; P40992; P46669; P47006; P50106; Q01080; Q04712;	8-112	7×ZN; 1×MG;
Assess
RNA polymerase I-Rrn3 complex at 4.8 A resolution	5g5l SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P07703; P10964; P20434; P20435; P20436; P22138; P22139; P28000; P32529; P36070; P40422; P46669; P47006; P50106; Q01080;	8-112	7×ZN;
Assess
RNA Polymerase I elongation complex 2	5m5y SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P07703; P10964; P20434; P20435; P20436; P22138; P22139; P28000; P32529; P40422; P46669; P47006; P50106; Q01080;	8-110	6×ZN;
Assess
RNA Polymerase I elongation complex 1	5m5x SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P07703; P10964; P20434; P20435; P20436; P22138; P22139; P28000; P32529; P40422; P46669; P47006; P50106; Q01080;	8-110	6×ZN;
Assess
Free monomeric RNA polymerase I at 4.0A resolution	5m3m SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P07703; P10964; P20434; P20435; P20436; P22138; P22139; P28000; P32529; P40422; P46669; P47006; P50106; Q01080;	8-104	7×ZN; 1×SO4;
Assess
Crystal structure of tandem winged helix domain of RNA polymerase I subunit A49	3nfi SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	185-403
Assess
Crystal structure of tandem winged helix domain of RNA polymerase I subunit A49 (P4)	3nfh SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	185-399
Assess

1 SWISS-MODEL model

Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
5w66.1.M	monomer	0.70	8-403		100.00
Assess

Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

B3LP88 (B3LP88_YEAS1) Saccharomyces cerevisiae (strain RM11-1a) (Baker's yeast)

RNA polymerase A 49 kDa alpha subunit UniProtKBInterProInteractive Modelling

Available Structures

35 Experimental Structures

1 SWISS-MODEL model

Alignments

Background

Resolution

RNA polymerase A 49 kDa alpha subunit UniProtKB InterPro Interactive Modelling