O00267 (SPT5H_HUMAN) Homo sapiens (Human)
Transcription elongation factor SPT5 UniProtKBInterProSTRINGInteractive Modelling
1087 aa; Sequence (Fasta) ; (Isoform 2)
It is possible new templates exist for this target since these models were created.
Available Structures
39 Experimental Structures
| Description | PDB ID | Oligo-state | Range | Seq id (%) | Ligands | |
|---|---|---|---|---|---|---|
| Pol II-DSIF-SPT6-PAF1c-TFIIS-nucleosome complex (stalled at +38) |
Heteromer A0A481DF93; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; A0A7M4DUC2; A0A8D1GCS3; P02281; P23193; P62799; P63272; P84233; Q6AZJ8; Q6P1J9; Q6PD62; Q7KZ85; Q8N7H5; Q8WVC0; Q92541; Q9GZS3; | 100.0 | 9×ZN; 1×MG; | |||
| Structure of complete, activated transcription complex Pol II-DSIF-PAF-SPT6 uncovers allosteric elo… |
Heteromer A0A287ADR4; A0A4X1TRS6; A0A4X1VEK9; A0A4X1VYD0; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; P60899; P63272; Q6P1J9; Q6PD62; Q7KZ85; Q8N7H5; Q8WVC0; Q92541; Q9GZS3; | 100.0 | 9×ZN; 1×MG; | |||
| Structure of mammalian Pol II-DSIF-SPT6-PAF1-TFIIS-hexasome elongation complex |
Heteromer A0A287ADR4; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VYD0; A0A7M4DUC2; A0A8D0JYF1; A0A8J1LZU9; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; P60899; P62799; P63272; P84233; Q6AZJ8; Q6P1J9; Q6PD62; Q7KZ85; Q8N7H5; Q8WVC0; Q92541; Q9GZS3; | 100.0 | 9×ZN; 1×MG; | |||
| RNA polymerase II-DSIF-SPT6-PAF1c-TFIIS-IWS1-SETD2-nucleosome, bp +27 |
Heteromer A0A310TTQ1; A0A481DF93; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; A0A7M4DUC2; A0A8D0TE17; A0A8D1AQR7; A0A8W4F9W9; P02281; P06897; P23193; P60899; P62799; P63272; Q6P1J9; Q6PD62; Q7KZ85; Q8N7H5; Q8WVC0; Q92541; Q96ST2; Q9BYW2; Q9GZS3; | 100.0 | 12×ZN; 1×MG; | |||
| RNA polymerase II-DSIF-SPT6-PAF1c-TFIIS-IWS1-SETD2-nucleosome, 30 bp upstream |
Heteromer A0A310TTQ1; A0A481DF93; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; A0A7M4DUC2; A0A8D0TE17; A0A8D1AQR7; A0A8W4F9W9; P02281; P06897; P23193; P60899; P62799; P63272; Q6P1J9; Q6PD62; Q7KZ85; Q8N7H5; Q8WVC0; Q92541; Q96ST2; Q9BYW2; Q9GZS3; | 100.0 | 9×ZN; 1×MG; | |||
| RNA polymerase II-DSIF-SPT6-PAF1c-TFIIS-IWS1-SETD2-FACT nucleosome upstream |
Heteromer A0A310TTQ1; A0A481DF93; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; A0A7M4DUC2; A0A8D0TE17; A0A8D1AQR7; A0A8W4F9W9; P02281; P06897; P23193; P60899; P62799; P63272; Q08945; Q6P1J9; Q6PD62; Q7KZ85; Q8N7H5; Q8WVC0; Q92541; Q96ST2; Q9BYW2; Q9GZS3; Q9Y5B9; | 100.0 | 9×ZN; 1×MG; | |||
| RNA polymerase II-DSIF-SPT6-PAF1c-TFIIS-IWS1-nucleosome, bp +27 |
Heteromer A0A310TTQ1; A0A481DF93; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; A0A7M4DUC2; A0A8D0TE17; A0A8D1AQR7; A0A8W4F9W9; P02281; P06897; P23193; P60899; P62799; P63272; Q6P1J9; Q6PD62; Q7KZ85; Q8N7H5; Q8WVC0; Q92541; Q96ST2; Q9GZS3; | 100.0 | 9×ZN; 1×MG; | |||
| RNA polymerase II-DSIF-SPT6-PAF1c-TFIIS-IWS1-hexasome, bp +27 |
Heteromer A0A310TTQ1; A0A481DF93; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; A0A7M4DUC2; A0A8D0TE17; A0A8D1AQR7; A0A8W4F9W9; P02281; P06897; P23193; P60899; P62799; P63272; Q6P1J9; Q6PD62; Q7KZ85; Q8N7H5; Q8WVC0; Q92541; Q96ST2; Q9GZS3; | 100.0 | 9×ZN; 1×MG; | |||
| The structure of INTAC-PEC complex |
Heteromer A0A4X1TRS6; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VM56; A0A8W4F9W9; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; P18615; P24928; P30153; P60899; P63272; P67775; Q5TA45; Q6P9B9; Q75QN2; Q8IXH7; Q8N201; Q8WX92; Q96HW7; Q9H0H0; Q9H3P2; Q9NV88; Q9NVH2; Q9UL03; | 100.0 | 10×ZN; 2×MN; 1×MG; | |||
| Structure of an RNA polymerase II-DSIF transcription elongation complex |
Heteromer A5PJW8; F2Z4H3; G3MZY8; P63272; Q1JQ91; Q2T9T3; Q32P73; Q32P78; Q32P79; Q32PE0; Q3T0Q3; Q3ZBC0; Q5E9B8; | 100.0 | 8×ZN; 1×MG; | |||
| Structural insights into human co-transcriptional capping - structure 6 |
Heteromer A0A4X1TRS6; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VM56; A0A4X1VYD0; A0A8D1DPV6; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; P60899; P63272; Q8N1G2; | 100.0 | 1×MGT; 8×ZN; 1×MG; 1×SAM; | |||
| Structure of activated transcription complex Pol II-DSIF-PAF-SPT6 |
Heteromer A0A287ADR4; A0A4X1TRS6; A0A4X1VEK9; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LJR4; I3LSI7; P60899; P63272; Q6PD62; Q7KZ85; Q9GZS3; | 100.0 | 9×ZN; 1×MG; | |||
| Structure of paused transcription complex Pol II-DSIF-NELF - tilted |
Heteromer A0A4X1TRS6; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VM56; A0A8D1DPV6; A0A8W4F9W9; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; P18615; P60899; P63272; Q8IXH7; Q8WX92; Q9H3P2; | 100.0 | 9×ZN; 1×MG; | |||
| human co-transcriptional RNA capping enzyme RNGTT |
Heteromer A0A4X1TRS6; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VM56; A0A8D1DPV6; A0A8W4F9W9; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; O60942; P18615; P60899; P63272; Q8IXH7; Q8WX92; Q9H3P2; | 100.0 | 1×MG; 8×ZN; 1×GTP; | |||
| human co-transcriptional RNA capping enzyme RNGTT-CMTR1 |
Heteromer A0A4X1TRS6; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VM56; A0A8D1DPV6; A0A8W4F9W9; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; O60942; P60899; P63272; Q8N1G2; | 100.0 | 1×MG; 8×ZN; 1×GTP; | |||
| Structural insights into human co-transcriptional capping - structure 3 |
Heteromer A0A4X1TRS6; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VM56; A0A8D1DPV6; A0A8W4F9W9; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; O60942; P60899; P63272; | 100.0 | 3×ZN; 1×MG; | |||
| Structural insights into human co-transcriptional capping - structure 4 |
Heteromer A0A4X1TRS6; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VM56; A0A8D1DPV6; A0A8W4F9W9; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; O60942; P60899; P63272; | 100.0 | 1×ZN; | |||
| Structure of active transcription elongation complex Pol II-DSIF-ELL2-EAF1(composite structure) |
Heteromer A0A287ADR4; A0A4X1TRS6; A0A4X1VEK9; A0A4X1VYD0; A0A7M4DUC2; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; O00472; P60899; P63272; Q96JC9; | 100.0 | 1×MG; 9×ZN; | |||
| Structure of paused transcription complex Pol II-DSIF-NELF |
Heteromer A0A287ADR4; A0A4X1TRS6; A0A4X1VEK9; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LJR4; I3LSI7; P60899; P63272; Q8IXH7; Q8WX92; Q9H3P2; | 100.0 | 1×MG; 9×ZN; | |||
| Structure of paused transcription complex Pol II-DSIF-NELF - post-translocated |
Heteromer A0A4X1TRS6; A0A4X1VEK9; A0A4X1VKG7; A0A8D0TE17; A0A8D1AQR7; A0A8D1DPV6; A0A8W4F9W9; I3LCH3; I3LGP4; I3LSI7; P18615; P60899; P63272; Q8IXH7; Q8WX92; Q9H3P2; | 100.0 | 9×ZN; 1×MG; | |||
| Pol II-DSIF-SPT6-PAF1c-TFIIS complex with rewrapped nucleosome |
Heteromer A0A481DF93; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; A0A7M4DUC2; A0A8D1GCS3; P02281; P23193; P62799; P84233; Q6AZJ8; Q6P1J9; Q6PD62; Q7KZ85; Q8N7H5; Q8WVC0; Q92541; Q9GZS3; | 100.0 | 8×ZN; 1×MG; | |||
| Structure of transcription complex Pol II-DSIF-NELF-TFIIS |
Heteromer A0A4X1VEK9; A0A4X1VKG7; A0A4X1VM56; A0A8D0JYF1; A0A8D1DPV6; A0A8W4F9W9; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; P23193; P60899; Q8IXH7; Q9H3P2; | 100.0 | 8×ZN; 1×MG; | |||
| Structure of poised transcription complex Pol II-DSIF-NELF - pre-translocated |
Heteromer A0A4X1TRS6; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VM56; A0A8D1DPV6; A0A8W4F9W9; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; P18615; P60899; Q8IXH7; Q8WX92; Q9H3P2; | 100.0 | 8×ZN; 1×MG; | |||
| Structure of paused transcription complex Pol II-DSIF-NELF - poised post-translocated |
Heteromer A0A4X1TRS6; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VM56; A0A8D1DPV6; A0A8W4F9W9; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; P18615; P60899; Q8IXH7; Q8WX92; Q9H3P2; | 100.0 | 8×ZN; 1×MG; | |||
| Structural basis of Integrator-mediated transcription regulation |
Heteromer A0A0B8RVL1; A0A287ADR4; A0A481DF93; A0A4X1TRS6; A0A4X1VEK9; A0A7K6NXI9; A0A7M4DUC2; F1RKE4; I3LCB2; I3LJR4; I3LSI7; P30153; P60899; P67775; Q5TA45; Q6P9B9; Q75QN2; Q8IXH7; Q8N201; Q8WX92; Q96HW7; Q9H0H0; Q9H3P2; Q9NV88; Q9NVH2; Q9UL03; | 100.0 | 1×MG; 10×ZN; 2×MN; | |||
| Structure of Integrator-PP2A bound to a paused RNA polymerase II-DSIF-NELF-nucleosome complex |
Heteromer A0A287ADR4; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VYD0; A0A8D0JYF1; A0A8D1DPV6; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; P06899; P0C0S8; P30153; P60899; P62805; P67775; Q5TA45; Q6NXT2; Q6P9B9; Q75QN2; Q8IXH7; Q8N201; Q8WX92; Q96HW7; Q96N11; Q96SY0; Q9H0H0; Q9H3P2; Q9NV88; Q9NVH2; Q9NVM9; Q9NVR2; Q9UL03; | 100.0 | 10×ZN; 1×MG; 2×MN; | |||
| Crystal structure of the human transcription elongation factor DSIF, hSpt4/hSpt5 (176-273) |
Heteromer P63272; | 100 | 1×BME; 1×ZN; | |||
| Structural insights into human co-transcriptional capping - structure 5 |
Heteromer A0A4X1TRS6; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VM56; A0A8W4F9W9; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; O60942; P11414; P60899; Q8N1G2; | 100 | 1×MG; 8×ZN; | |||
| Structure of active transcription elongation complex Pol II-DSIF (SPT5-KOW5) |
Heteromer A0A287ADR4; A0A4X1TRS6; A0A4X1VEK9; A0A4X1VYD0; A0A7M4DUC2; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; P60899; | 100 | 1×MG; 8×ZN; | |||
| Structure of active transcription elongation complex Pol II-DSIF (SPT5-KOW5)-ELL2-EAF1 (composite s… |
Heteromer A0A287ADR4; A0A4X1TRS6; A0A4X1VEK9; A0A4X1VYD0; A0A7M4DUC2; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; O00472; P60899; Q96JC9; | 100 | 1×MG; 8×ZN; | |||
| The crystal structure of a self-peptide complexed to Abacavir and HLA-B*57:01 |
Heteromer P01889; P61769; | 100 | 1×1KX; | |||
| Crystal Structure of Human Rtf1 Plus3 Domain in Complex with Spt5 CTR Phosphopeptide |
Heteromer Q92541; | 100 | 7×SO4; | |||
| 4th KOW domain of human hSpt5 | monomer | 100 | ||||
| 6th KOW domain of human hSpt5 | monomer | 100 | ||||
| Crystal structure of the KOWx-KOW4 domain of human DSIF | monomer | 100 | 2×GOL; | |||
| Crystal structure of the KOW6-KOW7 domain of human DSIF | monomer | 100 | 1×CL; 1×NA; | |||
| Solution structure of the fifth KOW motif of human transcription elongation factor SPT5 | monomer | 100 | ||||
| Solution structure of the third KOW motif of transcription elongation factor SPT5 | monomer | 100 | ||||
| Solution structure of the second KOW motif of human transcription elongation factor SPT5 | monomer | 100 | ||||
3 SWISS-MODEL models
| Template | Oligo-state | QMEAN | Range | Ligands | Trg-Tpl Seq id (%) | |
|---|---|---|---|---|---|---|
| 8p4d.1.R | monomer | 0.64 | 100.00 | |||
| 8p4c.1.R | monomer | 0.62 | 100.00 | |||
| 6ted.1.X | monomer | 0.62 | 100.00 | |||
3 SWISS-MODEL models built on isoform sequence
| Isoform | Template | Oligo-state | QMEAN | Range | Ligands | Trg-Tpl Seq id (%) | |
|---|---|---|---|---|---|---|---|
| Isoform 2 | 8p4d.1.R | monomer | 0.64 | 99.54 | |||
| Isoform 2 | 6ted.1.X | monomer | 0.62 | 99.54 | |||
| Isoform 2 | 8p4c.1.R | monomer | 0.62 | 99.54 | |||