SMTL ID : 8rbx.1

Structure of Integrator-PP2A bound to a paused RNA polymerase II-DSIF-NELF-nucleosome complex

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-2-1-1-1-1-1-1-1-1-1-1-1-2-2-2-2-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
Ligands
1 x UNK- UNK- UNK- UNK- UNK- UNK- UNK- UNK: UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK(Non-covalent)
10 x ZN: ZINC ION(Non-covalent)
1 x MG: MAGNESIUM ION(Non-covalent)
2 x MN: MANGANESE (II) ION(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Fianu, I. et al., Structural basis of Integrator-dependent RNA polymerase II termination. Nature (2024)
Release Date
2024-02-07
Peptides
DNA-directed RNA polymerase subunit: AX
DNA-directed RNA polymerase subunit beta: B
DNA-directed RNA polymerase II subunit RPB3: C
RNA polymerase II subunit D: D
DNA-directed RNA polymerase II subunit E: E
DNA-directed RNA polymerases I, II, and III subunit RPABC2: F
DNA-directed RNA polymerase II subunit RPB7: G
DNA-directed RNA polymerases I, II, and III subunit RPABC3: H
DNA-directed RNA polymerase II subunit RPB9: I
DNA-directed RNA polymerases I, II, and III subunit RPABC5: J
DNA-directed RNA polymerase II subunit RPB11-a: K
RNA polymerase II subunit K: L
Histone H3.3C: MS
Histone H4: OU
Histone H2A type 1: QV
Histone H2B type 1-J: RW
Transcription elongation factor SPT5: Y
Integrator complex subunit 1: Z
Integrator complex subunit 2: 0
Integrator complex subunit 4: 1
Integrator complex subunit 5: 2
Integrator complex subunit 6: 3
Integrator complex subunit 7: 4
Integrator complex subunit 8: 5
Integrator complex subunit 9: 6
Integrator complex subunit 10: 7
Integrator complex subunit 11: 8
Integrator complex subunit 13: 9
Integrator complex subunit 14: a
Integrator complex subunit 15: b
Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform: c
Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform: d
DSS1: e
Negative elongation factor A: f
NELF-B,Negative elongation factor B,Negative elongation factor B,Negative elongation factor B,Negative elongation factor B,Negative elongation factor B: g
Negative elongation factor C/D: h
UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK: i
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
X
Y
B
B
C
C
D
D
E
E
F
F
G
G
H
H
I
I
J
J
K
K
L
L
M
M
S
S
O
O
U
U
Q
Q
V
V
R
R
W
W
Y
Z
Z
a
0
b
1
d
2
e
3
f
4
g
5
h
6
i
7
j
8
k
9
m
a
n
b
o
c
p
d
q
e
r
f
u
g
v
h
w
i
x

DNA-directed RNA polymerase subunit

DNA-directed RNA polymerase subunit beta

DNA-directed RNA polymerase II subunit RPB3

RNA polymerase II subunit D

DNA-directed RNA polymerase II subunit E

DNA-directed RNA polymerases I, II, and III subunit RPABC2

DNA-directed RNA polymerase II subunit RPB7

DNA-directed RNA polymerases I, II, and III subunit RPABC3

DNA-directed RNA polymerase II subunit RPB9

DNA-directed RNA polymerases I, II, and III subunit RPABC5

DNA-directed RNA polymerase II subunit RPB11-a

RNA polymerase II subunit K

Histone H3.3C

Histone H4

Histone H2A type 1

Histone H2B type 1-J

Transcription elongation factor SPT5

Integrator complex subunit 1

Integrator complex subunit 2

Integrator complex subunit 4

Integrator complex subunit 5

Integrator complex subunit 6

Integrator complex subunit 7

Integrator complex subunit 8

Integrator complex subunit 9

Integrator complex subunit 10

Integrator complex subunit 11

Integrator complex subunit 13

Integrator complex subunit 14

Integrator complex subunit 15

Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform

Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform

DSS1

Negative elongation factor A

NELF-B,Negative elongation factor B,Negative elongation factor B,Negative elongation factor B,Negative elongation factor B,Negative elongation factor B

Negative elongation factor C/D

UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK

Related Entries With Identical Sequence

1eqz.1 | 1f66.1 | 1hq3.1 | 1tzy.1 | 1u35.1 | 2aro.1 | 2c35.1 | 2c35.2 | 2c35.3 | 2c35.4 | 2cv5.1 | 2f3i.1 | 2f8n.1 | 3nqu.1 | 3r45.1 | 4hga.1 | 4kgc.1 | 4ld9.1 | 4uq8.1 | 4wz7.1 | 4z2m.1 | 4zux.1 | 4zux.2 | 5c3i.1 | 5c3i.2 | 5c3i.3 | 5c3i.4 | 5c3i.5 | 5c3i.6 | 5cod.1  more...