SMTL ID : 8p4e.1

Structural insights into human co-transcriptional capping - structure 5

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain C: D.495, D.497, D.499 Chain P: C.21 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:D.495, C:D.497, C:D.499, C:D.499

8 x ZN: ZINC ION(Non-covalent)

ZN.2: 3 residues within 4Å: Chain C: C.111, C.114, G.183 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:C.111, C:C.114 ZN.3: 4 residues within 4Å: Chain C: C.71, C.74, C.81, H.84 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.71, C:C.74, C:C.81, C:H.84 ZN.4: 4 residues within 4Å: Chain D: C.1119, C.1122, C.1137, C.1140 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:C.1119, D:C.1122, D:C.1137 ZN.5: 5 residues within 4Å: Chain A: K.718 Chain E: C.88, C.90, C.94, C.97 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:C.88, E:C.90, E:C.94, E:C.97 ZN.6: 4 residues within 4Å: Chain I: C.17, C.20, C.39, C.42 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:C.17, I:C.20, I:C.39, I:C.42 ZN.7: 5 residues within 4Å: Chain I: C.86, C.89, C.114, C.119, H.121 3 PLIP interactions: 3 interactions with chain I Metal complexes: I:C.86, I:C.89, I:C.119 ZN.8: 4 residues within 4Å: Chain J: C.7, C.10, C.44, C.45 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:C.7, J:C.10, J:C.44, J:C.45 ZN.9: 5 residues within 4Å: Chain L: C.19, C.22, T.24, C.36, E.38 2 PLIP interactions: 2 interactions with chain L Metal complexes: L:C.22, L:C.36

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Garg, G. et al., Structural insights into human co-transcriptional capping. Mol.Cell (2023)

Release Date

2023-07-19

Peptides

Transcription elongation factor SPT5: A
mRNA-capping enzyme: B
DNA-directed RNA polymerase II subunit RPB1: C
DNA-directed RNA polymerase subunit beta: D
DNA-directed RNA polymerase II subunit RPB3: E
DNA-directed RNA polymerase II subunit E: F
DNA-directed RNA polymerase II subunit F: G
DNA-directed RNA polymerases I, II, and III subunit RPABC3: H
DNA-directed RNA polymerase II subunit RPB9: I
DNA-directed RNA polymerases I, II, and III subunit RPABC5: J
DNA-directed RNA polymerase II subunit RPB11-a: K
RNA polymerase II subunit K: L
RNA polymerase II subunit D: M
DNA-directed RNA polymerase II subunit RPB7: N
Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1: O

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
Z

B
M

C
A

D
B

E
C

F
E

G
F

H
H

I
I

J
J

K
K

L
L

M
D

N
G

O
O

Transcription elongation factor SPT5

mRNA-capping enzyme

DNA-directed RNA polymerase II subunit RPB1

DNA-directed RNA polymerase subunit beta

DNA-directed RNA polymerase II subunit RPB3

DNA-directed RNA polymerase II subunit E

DNA-directed RNA polymerase II subunit F

DNA-directed RNA polymerases I, II, and III subunit RPABC3

DNA-directed RNA polymerase II subunit RPB9

DNA-directed RNA polymerases I, II, and III subunit RPABC5

DNA-directed RNA polymerase II subunit RPB11-a

RNA polymerase II subunit K

RNA polymerase II subunit D

DNA-directed RNA polymerase II subunit RPB7

Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1

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