P27958 | SWISS-MODEL Repository

P27958 (POLG_HCV77) Hepatitis C virus genotype 1a (isolate H77) (HCV)

Genome polyprotein UniProtKB InterPro Interactive Modelling

It is possible new templates exist for this target since these models were created.

Available Structures

Mature core protein 2-177; PRO_0000037567

Description	PDB ID	Oligo-state	Range	Ligands
SOLUTION STRUCTURE OF THE HEPATITIS C VIRUS N-TERMINAL CAPSID PROTEIN 2-45 [C-HCV(2-45)]	1cwx SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	2-45
Assess

Core protein precursor 2-191; PRO_0000037566

Description	PDB ID	Oligo-state	Range	Ligands
SOLUTION STRUCTURE OF THE HEPATITIS C VIRUS N-TERMINAL CAPSID PROTEIN 2-45 [C-HCV(2-45)]	1cwx SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	2-45
Assess

Envelope glycoprotein E1 192-383; PRO_0000037569

Description	PDB ID	Oligo-state	Range	Ligands
Structure of the Hepatitis C Envelope Glycoprotein E1 antigenic region 314-324 bound to the cross-n…	4n0y SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer	314-324	7×GOL; 1×CL;
Assess

Envelope glycoprotein E2 384-746; PRO_0000037570

Description	PDB ID	Oligo-state	Range	Ligands
Structure of Hepatitis C Virus Envelope Glycoprotein E2 core from genotype 1a bound to neutralizing…	6woq SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer	420-645	3×NAG; 1×NAG;
Assess
Structure of Hepatitis C Virus Envelope Glycoprotein E2mc3-v1 redesigned core from genotype 1a boun…	6uyd SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer	421-645	1×NAG; 3×NAG;
Assess
Structure of Hepatitis C Virus Envelope Glycoprotein E2 core from genotype 1a bound to neutralizing…	6wo5 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer	421-645	1×NAG; 2×NAG; 1×BMA; 2×NAG;
Assess
Structure of Hepatitis C Virus Envelope Glycoprotein E2 core bound to broadly neutralizing antibody…	4mwf SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer	421-645	1×NAG; 4×NAG;
Assess
Structure of Hepatitis C Virus Envelope glycoprotein E2 antigenic region 434-446 bound to the broad…	4z0x SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer	435-446
Assess
STRUCTURE OF THE HEPATITIS C VIRUS ENVELOPE GLYCOPROTEIN E2 ANTIGENIC 2 REGION 412-423 BOUND TO THE…	4xvj SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer	412-423
Assess
Three dimensional structure of broadly neutralizing human anti - Hepatitis C virus (HCV) glycoprote…	4jzn SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer	435-446	1×SO4;
Assess
Structure of the Hepatitis C virus envelope glycoprotein E2 antigenic region 412-423 bound to the 2…	6bzy SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer	412-422
Assess
Crystal structure of Fab C2 in complex with a Cyclic variant of Hepatitis C Virus E2 epitope I	5eoc SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer	412-422
Assess
Three dimensional structure of broadly neutralizing human anti - Hepatitis C virus (HCV) glycoprote…	4jzo SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer	436-446
Assess
Structure of the Hepatitis C virus envelope glycoprotein E2 antigenic region 412-423 bound to the G…	6bzv SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer	413-422
Assess
Structure of the Hepatitis C virus envelope glycoprotein E2 antigenic region 412-423 bound to the b…	6bzu SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer	412-421
Assess
Three dimensional structure of broadly neutralizing human anti - Hepatitis C virus (HCV) glycoprote…	5fgc SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer	415-423
Assess
Structure of the Hepatitis C virus envelope glycoprotein E2 antigenic region 412-423 bound to the G…	6bzw SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer	413-421
Assess
Crystal structure of non-neutralizing antibody in complex with Epitope II of HCV E2	4q0x SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer A2NHM3; Q99LC4;	434-442
Assess
Structure of HCV E2 glycoprotein antigenic Epitope II bound to the broadly neutralizing antibody HC…	5erw SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer	438-446
Assess
Three dimensional structure of broadly neutralizing human anti - Hepatitis C virus (HCV) glycoprote…	5fgb SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer	417-421	2×GOL; 5×SO4;
Assess

Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
7t6x.1.A	monomer	0.68	420-717	1×NAG;	88.95
Assess

Protease NS2 810-1026; PRO_0000037572

Description	PDB ID	Oligo-state	Range	Ligands
Structure of the catalytic domain of hepatitis C virus NS2	2hd0 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	homo-2-mer	903-1026	4×BOG;
Assess

Serine protease/helicase NS3 1027-1657; PRO_0000037573

Description	PDB ID	Oligo-state	Range	Ligands
Crystal structure of the S139A mutant of Hepatitis C Virus NS3/4A protease	2o8m SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer	1027-1696	2×ZN; 2×NA;
Assess
Structure of NS3 complexed with a ketoamide inhibitor SCh491762	2oc0 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer	1027-1696	2×ZN; 1×BME; 1×HU1;
Assess
HCV NS3 Protease Domain with a Ketoamide Inhibitor Covalently bound.	2a4r SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer	1027-1696	2×ZN; 1×BNH;
Assess
Discovery of the HCV NS3/4A Protease Inhibitor SCH503034. Key Steps in Structure-Based Optimization	2obq SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer	1027-1696	2×ZN;
Assess
HCV NS3 protease domain with NS4a peptide and a ketoamide inhibitor with P1 and P2 cyclopropylalann…	2f9v SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer	1027-1696	2×ZN; 1×BN6;
Assess
Structure of Hepatitis C Viral NS3 protease domain complexed with NS4A peptide and ketoamide SCH503…	2oc8 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer	1027-1696	2×ZN; 1×BME; 1×U5G;
Assess
Structure of the HCV NS3/4A Protease Inhibitor CVS4819	2oc1 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer	1027-1696	2×ZN; 1×HU2;
Assess
Structure of Hepatitis C Viral NS3 protease domain complexed with NS4A peptide and ketoamide SCH571…	2oc7 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer	1027-1696	2×ZN; 1×BME; 1×HU4;
Assess
crystal structure of HCV NS3-4A R155K mutant	2oin SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer	1055-1693	1×ZN;
Assess
Molecular mechanisms of viral and host-cell substrate recognition by HCV NS3/4A protease	3rc4 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer Q8IUC6;	1026-1206	1×SO4; 1×ZN;
Assess
Molecular mechanisms of viral and host-cell substrate recognition by HCV NS3/4A protease	3rc5 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer Q7Z434;	1026-1206	2×SO4; 1×ZN;
Assess
M9A HCV Protease complex with pentapeptide keto-amide inhibitor	1rgq SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer O39914;	1027-1207	2×ZN; 1×AKP;
Assess
CRYSTAL STRUCTURE OF HCV NS3 PROTEASE DOMAIN:NS4A PEPTIDE COMPLEX WITH COVALENTLY BOUND INHIBITOR (…	1n1l SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer O39914;	1027-1206	1×ZN; 1×TRL;
Assess
Protein-ligand complex of a novel macrocyclic HCV NS3 protease inhibitor derived from amino cyclic …	2xni SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer C9WU77;	1027-1206	1×TR8; 2×ZN; 2×MG;
Assess
HCV NS3 PROTEASE DOMAIN:NS4A PEPTIDE COMPLEX	1a1r SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer O39914;	1055-1206	1×ZN;
Assess
A T cell receptor in complex with HLA-A0201 restricted Hepatitis C virus NS3 peptide (KLVALGINAV)	5yxn SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P04439; P61769;	1406-1415
Assess
Crystal structure of 1406 TCR bound to HLA-A2 with HCV 1406-1415 antigen peptide	5jzi SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P04439; P61769;	1406-1415
Assess
an affinity enhanced T cell receptor in complex with HLA-A0201 restricted HCV NS3 peptide KLVALGINAV	5yxu SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P04439; P61769;	1406-1415
Assess
Crystal structure of HLA molecule with an KIR receptor	7duu SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer F6IQA6; P43631; P61769;	1254-1262
Assess
STRUCTURE OF THE HEPATITIS C VIRUS RNA HELICASE DOMAIN	1hei SMTL PDBe PDBe-KB PDBj PDBsum RCSB	homo-2-mer	1213-1655	2×CA;
Assess
HEPATITIS C VIRUS NS3 HELICASE DOMAIN COMPLEXED WITH SINGLE STRANDED SDNA	1a1v SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	1216-1650	1×SO4;
Assess
CRYSTAL STRUCTURE OF HEPATIS C VIRUS PROTEASE (NS3) COMPLEXED WITH TRIPEPTIDIC ACYL SULFONAMIDE INH…	6bqj SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	1030-1208	1×Z1B; 1×ZN; 1×CL; 2×ACT;
Assess
CRYSTAL STRUCTURE OF HEPATIS C VIRUS PROTEASE (NS3) COMPLEXED WITH TRIPEPTIDIC ACYL SULFONAMIDE INH…	6bqk SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	1030-1208	1×Z1E; 1×ZN;
Assess
Solution Structure of an Engineered Arginine-rich Subdomain 2 of the Hepatitis C Virus NS3 RNA Heli…	1jr6 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	1353-1507
Assess
Solution structure of an engineered arginine-rich subdomain 2 of the hepatitis C virus NS3 RNA heli…	1onb SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	1353-1507
Assess

Non-structural protein 4A 1658-1711; PRO_0000037574

Description	PDB ID	Oligo-state	Range	Ligands
Crystal structure of the S139A mutant of Hepatitis C Virus NS3/4A protease	2o8m SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer	1027-1696	2×ZN; 2×NA;
Assess
Structure of NS3 complexed with a ketoamide inhibitor SCh491762	2oc0 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer	1027-1696	2×ZN; 1×BME; 1×HU1;
Assess
HCV NS3 Protease Domain with a Ketoamide Inhibitor Covalently bound.	2a4r SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer	1027-1696	2×ZN; 1×BNH;
Assess
Discovery of the HCV NS3/4A Protease Inhibitor SCH503034. Key Steps in Structure-Based Optimization	2obq SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer	1027-1696	2×ZN;
Assess
HCV NS3 protease domain with NS4a peptide and a ketoamide inhibitor with P1 and P2 cyclopropylalann…	2f9v SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer	1027-1696	2×ZN; 1×BN6;
Assess
Structure of Hepatitis C Viral NS3 protease domain complexed with NS4A peptide and ketoamide SCH503…	2oc8 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer	1027-1696	2×ZN; 1×BME; 1×U5G;
Assess
Structure of the HCV NS3/4A Protease Inhibitor CVS4819	2oc1 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer	1027-1696	2×ZN; 1×HU2;
Assess
Structure of Hepatitis C Viral NS3 protease domain complexed with NS4A peptide and ketoamide SCH571…	2oc7 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer	1027-1696	2×ZN; 1×BME; 1×HU4;
Assess
crystal structure of HCV NS3-4A R155K mutant	2oin SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer	1055-1693	1×ZN;
Assess
Crystal structure of HCV NS3-4A V36M mutant	2qv1 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer A1Z093;	1678-1693	1×ZN;
Assess
Crystal Structure of Hepatitis C Virus NS3.4A protease	2p59 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer Q91RS4;	1678-1693
Assess

Non-structural protein 4B 1712-1972; PRO_0000037575

Description	PDB ID	Oligo-state	Range
The solution structure of HCV NS4B(40-69)	2jxf SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	1751-1780
Assess
Solution structure of HCV NS4B(227-254)	2kdr SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	1938-1965
Assess

Non-structural protein 5A 1973-2420; PRO_0000037576

Description	PDB ID	Oligo-state	Range
NMR structure of the membrane anchor domain (1-31) of the nonstructural protein 5A (NS5A) of hepati…	1r7g SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	1973-2003
Assess
NMR structure of the membrane anchor domain (1-31) of the nonstructural protein 5A (NS5A) of hepati…	1r7f SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	1973-2003
Assess
NMR structure of the membrane anchor domain (1-31) of the nonstructural protein 5A (NS5A) of hepati…	1r7d SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	1973-2003
Assess
NMR structure of the membrane anchor domain (1-31) of the nonstructural protein 5A (NS5A) of hepati…	1r7e SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	1973-2003
Assess
NMR structure of the membrane anchor domain (1-31) of the nonstructural protein 5A (NS5A) of hepati…	1r7c SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	1973-2003
Assess

RNA-directed RNA polymerase 2421-3011; PRO_0000037577

Description	PDB ID	Oligo-state	Range	Ligands
HCV-H77 NS5B Polymerase Complexed With GTP	2xi3 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	2421-2982	3×GTP; 3×MG;
Assess
HCV-H77 NS5B Apo Polymerase	2xi2 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	2421-2982	7×SO4;
Assess
Structure of the C-terminal membrane domain of HCV NS5B protein	2n1p SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	2982-3011
Assess

Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
4khm.1.A	monomer	0.83	2421-2982	1×1PV;	97.19
Assess

Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

P27958 (POLG_HCV77) Hepatitis C virus genotype 1a (isolate H77) (HCV)

Genome polyprotein UniProtKBInterProInteractive Modelling

Available Structures

Mature core protein 2-177; PRO_0000037567

Core protein precursor 2-191; PRO_0000037566

Envelope glycoprotein E1 192-383; PRO_0000037569

Envelope glycoprotein E2 384-746; PRO_0000037570

Protease NS2 810-1026; PRO_0000037572

Serine protease/helicase NS3 1027-1657; PRO_0000037573

Non-structural protein 4A 1658-1711; PRO_0000037574

Non-structural protein 4B 1712-1972; PRO_0000037575

Non-structural protein 5A 1973-2420; PRO_0000037576

RNA-directed RNA polymerase 2421-3011; PRO_0000037577

Alignments

Background

Resolution

Genome polyprotein UniProtKB InterPro Interactive Modelling