P32561 (RPD3_YEAST) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Histone deacetylase RPD3 UniProtKBInterProSTRINGInteractive Modelling
433 aa; Sequence (Fasta) ;
7 identical sequences: Saccharomyces cerevisiae: N1NWJ8, C8ZGJ5, C7GWS5, B3LPG2; Saccharomyces paradoxus: A0A8B8UXZ2; Saccharomyces boulardii: A0A0L8VI25; Saccharomyces cerevisiae x Saccharomyces kudriavzevii: H0GM14
It is possible new templates exist for this target since these models were created.
Available Structures
25 Experimental Structures
| Description | PDB ID | Oligo-state | Range | Seq id (%) | Ligands | |
|---|---|---|---|---|---|---|
| Rpd3S histone deacetylase complex |
Heteromer P22579; Q04779; Q12432; | 100.0 | ||||
| Rpd3S bound to the nucleosome |
Heteromer P02281; P06897; P22579; P62799; P84233; Q04779; Q12432; | 100.0 | 1×ZN; 1×CA; | |||
| Cryo-EM structure of the Rpd3S core complex |
Heteromer P22579; P84233; Q04779; Q12432; | 100.0 | 1×ZN; 1×CA; | |||
| Rpd3S in complex with 187bp nucleosome |
Heteromer P02281; P06897; P22579; P62799; P84233; Q04779; Q12432; | 100.0 | ||||
| Rpd3S in complex with nucleosome with H3K36MLA modification and 167bp DNA |
Heteromer P02281; P06897; P22579; P62799; P84233; Q04779; Q12432; | 100.0 | ||||
| Rpd3S in complex with nucleosome with H3K36MLA modification and 187bp DNA, class2 |
Heteromer P02281; P06897; P22579; P62799; P84233; Q04779; Q12432; | 100.0 | 1×ZN; | |||
| Rpd3S in complex with nucleosome with H3K36MLA modification and 187bp DNA, class3 |
Heteromer P02281; P06897; P22579; P62799; P84233; Q04779; Q12432; | 100.0 | 1×ZN; | |||
| Rpd3S in complex with nucleosome with H3K36MLA modification, H3K9Q mutation and 187bp DNA |
Heteromer A0A310TTQ1; P02281; P22579; P62799; Q04779; Q12432; Q6AZJ8; | 100.0 | 1×ZN; | |||
| Rpd3S in complex with nucleosome with H3K36MLA modification and 187bp DNA, class1 |
Heteromer P02281; P06897; P22579; P62799; P84233; Q04779; Q12432; | 100.0 | 1×ZN; | |||
| Cryo-EM structure of a SIN3/HDAC complex from budding yeast |
Heteromer P22579; P31385; P38255; P38429; P40505; P50947; Q03010; Q07458; | 100 | 1×TPO; 2×ZN; 4×K; | |||
| Cryo-EM structure of the Rpd3S complex from budding yeast |
Heteromer P22579; Q04779; Q12432; | 100 | 7×ZN; 2×K; | |||
| Cryo-EM structure of the Rpd3S-nucleosome complex from budding yeast in State 2 |
Heteromer O60814; P04908; P22579; P62805; P68431; Q04779; Q12432; | 100 | 7×ZN; 1×K; | |||
| Cryo-EM structure of the Rpd3S-nucleosome complex from budding yeast in State 3 |
Heteromer O60814; P04908; P22579; P62805; P68431; Q04779; Q12432; | 100 | 7×ZN; | |||
| Cryo-EM structure of the Rpd3S-nucleosome complex from budding yeast in State 1 |
Heteromer O60814; P04908; P22579; P62805; P68431; Q04779; Q12432; | 100 | 7×ZN; 2×K; | |||
| Rpd3S bound to an H3K36Cme3 modified nucleosome |
Heteromer P02281; P02302; P06897; P22579; P62799; Q04779; Q12432; | 100 | 5×ZN; | |||
| Cryo-EM structure of the histone deacetylase complex Rpd3S in complex with di-nucleosome |
Heteromer P02281; P06897; P22579; P62799; P84233; Q04779; Q12432; | 100 | 7×ZN; | |||
| Cryo-EM structure of the histone deacetylase complex Rpd3S |
Heteromer P22579; P84233; Q04779; Q12432; | 100 | 7×ZN; | |||
| Cryo-EM structure of the histone deacetylase complex Rpd3S in complex with nucleosome |
Heteromer P02281; P06897; P22579; P62799; P84233; Q04779; Q12432; | 100 | 5×ZN; | |||
| Composite cryo-EM structure of the histone deacetylase complex Rpd3S in complex with nucleosome |
Heteromer P02281; P06897; P22579; P62799; P84233; Q04779; Q12432; | 100 | 7×ZN; | |||
| Structure of the yeast (HDAC) Rpd3L complex |
Heteromer P22579; P31385; P38255; P38429; P40505; P50947; Q07458; | 100 | 2×ZN; | |||
| Cryo-EM structure of Rpd3S complex |
Heteromer P22579; Q04779; Q12432; | 100 | 7×ZN; | |||
| Cryo-EM structure of Rpd3S complex bound to H3K36me3 nucleosome in loose state |
Heteromer P02281; P06897; P22579; P62799; P84233; Q04779; Q12432; | 100 | 5×ZN; | |||
| Cryo-EM structure of Rpd3S in loose-state Rpd3S-NCP complex |
Heteromer P22579; Q04779; Q12432; | 100 | 5×ZN; | |||
| Cryo-EM structure of Rpd3S in close-state Rpd3S-NCP complex |
Heteromer P22579; Q04779; Q12432; | 100 | 5×ZN; | |||
| Cryo-EM structure of Rpd3S complex bound to H3K36me3 nucleosome in close state |
Heteromer P02281; P06897; P22579; P62799; P84233; Q04779; Q12432; | 100 | 5×ZN; | |||
1 SWISS-MODEL model
| Template | Oligo-state | QMEAN | Range | Ligands | Trg-Tpl Seq id (%) | |
|---|---|---|---|---|---|---|
| 8hpo.1.C | monomer | 0.85 | 1×ZN; 2×K; | 100.00 | ||