P59594 (SPIKE_CVHSA) Human SARS coronavirus (SARS-CoV) (Severe acute respiratory syndromecoronavirus)

Spike glycoprotein UniProtKBInterProInteractive Modelling

1255 aa; Sequence (Fasta) 26 identical sequences

Sequence Features

 49S -> L (in strain: Isolate GZ50)
 77G -> D (in strain: Isolate BJ01, Isolate BJ02, Isolate BJ03, Isolate GZ50, Isolate CUHK-W1, Isolate HKU- 36871, Isolate GD01, Isolate GD03 and Isolate SZ3)
 78N -> D (in strain: Isolate GD03)
 118N -> S (in strain: Isolate Shanghai LY)
 139A -> V (in strain: Isolate GD03)
 144M -> L (in strain: Isolate BJ03)
 147Q -> R (in strain: Isolate GD03)
 193F -> S (in strain: Isolate Shanghai LY)
 227N -> K (in strain: Isolate SZ3)
 239S -> L (in strain: Isolate GD01 and Isolate SZ3)
 244I -> T (in strain: Isolate BJ01, Isolate BJ02, Isolate BJ03, Isolate BJ04, Isolate GZ50, Isolate CUHK-W1, Isolate HKU-36871, Isolate GD01, Isolate GD03 and Isolate SZ3)
 261T -> K (in strain: Isolate SZ3)
 311G -> R (in strain: Isolate GD01 and Isolate BJ02)
 344K -> R (in strain: Isolate GD01, Isolate GD03 and Isolate SZ3; no effect on affinity with either human or palm civet ACE2)
 360F -> S (in strain: Isolate GD03 and Isolate SZ3; no effect on affinity with either human or palm civet ACE2)
 426R -> G (in strain: Isolate Shanghai LY)
 437N -> D (in strain: Isolate Shanghai LY)
 472L -> P (in strain: Isolate GD03)
 479N -> K (in strain: Isolate SZ3; 20fold decrease of affinity with human ACE2; no effect on affinity with palm civet ACE2)
 480D -> G (in strain: Isolate GD03)
 487T -> S (in strain: Isolate GD03 and Isolate SZ3; 20fold decrease of affinity with human ACE2; decrease of affinity with palm civet ACE2)
 501F -> Y (in strain: Isolate GD01)
 577S -> A (in strain: Isolate Tor2 and Isolate Shanghai QXC1)
 605D -> N (in strain: Isolate Shanghai QXC1)
 607S -> P (in strain: Isolate SZ3)
 608T -> A (in strain: Isolate Shanghai QXC1)
 609A -> L (in strain: Isolate GD03)
 613D -> E (in strain: Isolate GD03)
 665L -> S (in strain: Isolate GD03 and Isolate SZ3)
 701S -> L (in strain: Isolate SZ3)
 743T -> A (in strain: Isolate SZ3)
 743T -> R (in strain: Isolate GD03)
 754A -> V (in strain: Isolate SZ3)
 765A -> V (in strain: Isolate GD03)
 778Y -> D (in strain: Isolate GD01, Isolate GZ50, Isolate GD03 and Isolate SZ3)
 794P -> S (in strain: Isolate GD01)
 804L -> P (in strain: Isolate Shanghai LY)
 894T -> A (in strain: Isolate SZ3)
 999E -> G (in strain: Isolate Shanghai LY)
 1001R -> M (in strain: Isolate BJ04)
 1132E -> G (in strain: Isolate Shanghai QXC1)
 1148L -> F (in strain: Isolate Frankfurt 1 and Isolate FRA)
 1163K -> E (in strain: Isolate GD03 and Isolate SZ3)
 1196-1216Helical
 667-668Cleavage
 797-798Cleavage
 323-348
 366-419
 467-474
 860-861VS -> LR (in strain: Isolate BJ03)
 100-280Spike glycoprotein, N-terminal
IPR032500PF16451
 317-568Spike receptor binding domain
IPR018548PF09408
 658-1252Coronavirus S2 glycoprotein
IPR002552PF01601

Sequence Alignments

Experimental structures

DescriptionOligo-stateLigandsStructureRangeDownloadAssess
SARS Spike Glycoprotein - human ACE2 complex, Stabilized variant, all ACE2-bound particles Heteromer
Q9BYF1;
60×NAG; 20×BMA; 11×MAN;6cs218-1129
SARS-CoV complex with human neutralizing S230 antibody Fab fragment (state 1) Heteromer
93×NAG; 37×BMA; 19×MAN;6nb618-1127
SARS-CoV complex with human neutralizing S230 antibody Fab fragment (state 2) Heteromer
90×NAG; 31×BMA; 16×MAN;6nb718-1127
'Trypsin-cleaved and low pH-treated SARS-CoV spike glycoprotein and ACE2 complex, ACE2-bound confor… Heteromer
Q9BYF1;
6acg18-1119
'Trypsin-cleaved and low pH-treated SARS-CoV spike glycoprotein and ACE2 complex, ACE2-bound confor… Heteromer
Q9BYF1;
6acj18-1119
'Trypsin-cleaved and low pH-treated SARS-CoV spike glycoprotein and ACE2 complex, ACE2-bound confor… Heteromer
Q9BYF1;
6ack18-1119
'Crystal Structure of SARS-CoV Spike Receptor-Binding Domain Complexed with Neutralizing Antibody' Heteromer
PO4;NAG;2dd8321-512
'Crystal structure of SARS spike protein receptor binding domain in complex with a neutralizing ant… Heteromer
CL;2ghw319-509
'Crystal structure of the SARS-CoV-1 RBD bound by the cross-reactive single-domain antibody SARS VH… Heteromer
NAG;6waq321-502
Crystal structure of spike protein receptor-binding domain from a predicted SARS coronavirus human … Heteromer
Q9BYF1;
ZN;CL;3sci323-502
Structure of SARS coronavirus spike receptor-binding domain complexed with its receptor Heteromer
Q9BYF1;
NAG;BMA;ZN;CL;2ajf323-502
'X-ray crystal structure of the SARS coronavirus spike receptor binding domain in complex with F26G… Heteromer
Q7TS98; Q8CGS2;
3bgf323-502
Crystal structure of spike protein receptor-binding domain from a predicted SARS coronavirus civet … Heteromer
Q9BYF1;
ZN;CL;3scj323-502
Crystal structure of spike protein receptor-binding domain from the 2002-2003 SARS coronavirus huma… Heteromer
Q56NL1; Q9BYF1;
NDG;ZN;CL;NAG;3d0g324-502
Crystal structure of spike protein receptor-binding domain from the 2005-2006 SARS coronavirus cive… Heteromer
Q56NL1; Q9BYF1;
NDG;ZN;CL;NAG;3d0i324-502
Crystal structure of spike protein receptor-binding domain from a predicted SARS coronavirus civet … Heteromer
Q56NL1; Q9BYF1;
ZN;CL;3sck324-502
Crystal structure of spike protein receptor-binding domain from SARS coronavirus epidemic strain co… Heteromer
Q56NL1; Q9BYF1;
ZN;CL;3scl324-502
Crystal structure of spike protein receptor-binding domain from the 2002-2003 SARS coronavirus cive… Heteromer
Q56NL1; Q9BYF1;
NDG;ZN;CL;NAG;3d0h324-502
'Crystal Structure of the Human Coronavirus SARS HR1 motif in complex with pan-CoVs inhibitor EK1' Heteromer
5zvm892-968
'Structure of a Proteolytically Resistant Core from the Severe Acute Respiratory Syndrome Coronavir…homo-12-mer 2beq914-1193
'Structure of a proteolitically resistant core from the severe acute respiratory syndrome coronavir…homo-6-mer GOL;2bez896-1183
A structure-based mechanism of SARS virus membrane fusionhomo-6-mer NA;1zv8901-1182
Crystal structure of the SARS-CoV Spike protein fusion corehomo-6-mer 1wnc901-948
A structure-based mechanism of SARS virus membrane fusionhomo-4-mer CL;1zv71150-1187
SARS Spike Glycoprotein, Stabilized variant, C3 symmetryhomo-3-mer 36×NAG;BMA;6crv18-1120
SARS Spike Glycoprotein, Stabilized variant, single upwards S1 CTD conformationhomo-3-mer 55×NAG; 12×BMA;MAN;6crw18-1120
SARS Spike Glycoprotein, Stabilized variant, two S1 CTDs in the upwards conformationhomo-3-mer 61×NAG;BMA;MAN;6crx18-1120
SARS Spike Glycoprotein, Trypsin-cleaved, Stabilized variant, C3 symmetryhomo-3-mer 53×NAG; 11×BMA;MAN;6crz18-1120
'SARS Spike Glycoprotein, Trypsin-cleaved, Stabilized variant, one S1 CTD in an upwards conformatio…homo-3-mer 53×NAG; 11×BMA;MAN;6cs018-1120
'SARS Spike Glycoprotein, Trypsin-cleaved, Stabilized variant, two S1 CTDs in an upwards conformati…homo-3-mer 54×NAG; 12×BMA;MAN;6cs118-1120
Trypsin-cleaved and low pH-treated SARS-CoV spike glycoprotein and ACE2 complex, ACE2-free conforma…homo-3-mer 6acc18-1119
Trypsin-cleaved and low pH-treated SARS-CoV spike glycoprotein and ACE2 complex, ACE2-free conforma…homo-3-mer 6acd18-1119
Structure of SARS-CoV spike glycoproteinhomo-3-mer 5xlr33-1120
Prefusion structure of SARS-CoV spike glycoprotein, conformation 1homo-3-mer 42×NAG;5x5818-1104
Prefusion structure of SARS-CoV spike glycoprotein, conformation 2homo-3-mer 5x5b18-1104
SARS-CoV spike glycoproteinhomo-3-mer 5wrg261-1058
Post-fusion hairpin conformation of the sars coronavirus spike glycoproteinhomo-3-mer CL;1wyy890-981
Solution Structure of the SARS-Coronavirus HR2 Domainhomo-3-mer 2fxp1141-1193
A structure-based mechanism of SARS virus membrane fusionhomo-3-mer 1zvb940-973
A structure-based mechanism of SARS virus membrane fusionhomo-2-mer 1zva926-1181
Crystal structure of SARS spike protein receptor binding domainhomo-2-mer 2ghv320-502
Structure of the N-terminal domain (NTD)of SARS-CoV spike proteinmonomer NAG;5x4s18-289
'NMR Structure and Localization of a Large Fragment of the SARS-CoV Fusion Protein: Implications in…monomer 5xjk758-821
Solution structure of Fusion peptidemonomer 2rum770-788
Solution Structure of Pre Transmembrane domainmonomer 2run1185-1202
Solution Structure of Internal Fusion Peptidemonomer 2ruo873-888