Q12417 (PRP46_YEAST) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Pre-mRNA-splicing factor PRP46 UniProtKBInterProSTRINGInteractive Modelling
451 aa; Sequence (Fasta) ;
2 identical sequences: Saccharomyces cerevisiae: N1NW12; Saccharomyces pastorianus: A0A6C1E1F5
It is possible new templates exist for this target since these models were created.
However, an attempt to improve models for this target was made on 2025-04-07. The outcome - failed for technical reasons.
Available Structures
17 Experimental Structures
| Description | PDB ID | Oligo-state | Range | Seq id (%) | Ligands | |
|---|---|---|---|---|---|---|
| Structure of the yeast post-catalytic P complex spliceosome at 2.3 Angstrom resolution |
Heteromer P21374; P24384; P25337; P28004; P32523; P33334; P33411; P36048; P38241; P38302; P40018; P40204; P40567; P40968; P43321; P53277; P53333; P53913; P54999; Q02260; Q02775; Q03375; Q03654; Q03772; Q04048; Q06091; Q06217; Q08963; Q12046; Q12309; Q12330; | 100.0 | 2×MG; 4×K; 2×IHP; 1×GTP; 7×ZN; | |||
| S. cerevisiae spliceosomal post-catalytic P complex |
Heteromer P24384; P25337; P28004; P32523; P33334; P33411; P36048; P38241; P40018; P40204; P40567; P40968; P43321; P53277; P53333; P54999; Q02260; Q02775; Q03375; Q03654; Q03772; Q04048; Q06091; Q06217; Q08963; Q12046; Q12309; Q12330; | 100 | 5×MG; 1×IHP; 1×GTP; 7×ZN; | |||
| Cryo-EM structure of the yeast B*-a2 complex at an average resolution of 3.2 angstrom |
Heteromer P21374; P25337; P28004; P32523; P33334; P36048; P38241; P40018; P40204; P40567; P40968; P43321; P53277; P53333; P54999; Q02260; Q03375; Q03654; Q03772; Q04048; Q06091; Q06217; Q08963; Q12046; Q12309; Q12330; | 100 | 1×IHP; 1×GTP; 6×MG; 6×ZN; | |||
| Cryo-EM structure of the yeast B*-a1 complex at an average resolution of 3.6 angstrom |
Heteromer P21374; P25337; P28004; P32523; P33334; P36048; P38241; P40018; P40204; P40567; P40968; P43321; P53277; P53333; P54999; Q02260; Q03375; Q03654; Q03772; Q04048; Q06091; Q06217; Q08963; Q12046; Q12309; Q12330; | 100 | 1×IHP; 1×GTP; 6×MG; 6×ZN; | |||
| Cryo-EM structure of the yeast B*-b1 complex at an average resolution of 3.86 angstrom |
Heteromer P21374; P25337; P28004; P32523; P33334; P36048; P38241; P40018; P40204; P40567; P40968; P43321; P53277; P53333; P54999; Q02260; Q03375; Q03654; Q03772; Q04048; Q06091; Q06217; Q08963; Q12046; Q12309; Q12330; | 100 | 1×IHP; 1×GTP; 6×MG; 6×ZN; | |||
| Cryo-EM structure of the yeast B*-b2 complex at an average resolution of 3.7 angstrom |
Heteromer P21374; P25337; P28004; P28320; P32523; P33334; P36048; P38241; P40018; P40204; P40567; P40968; P43321; P53277; P53333; P54999; Q02260; Q03375; Q03654; Q03772; Q04048; Q06091; Q06217; Q08963; Q12046; Q12309; Q12330; | 100 | 1×IHP; 1×GTP; 6×MG; 7×ZN; | |||
| Structure of a spliceosome remodeled for exon ligation |
Heteromer P24384; P25337; P28004; P32523; P33334; P33411; P36048; P38241; P40018; P40204; P40567; P40968; P43321; P53277; P53333; P54999; Q02260; Q02775; Q03375; Q03654; Q03772; Q04048; Q06091; Q06217; Q08963; Q12046; Q12309; Q12330; | 100 | 3×MG; 2×K; 1×IHP; 1×GTP; 6×ZN; | |||
| Post-catalytic P complex spliceosome with 3' splice site docked |
Heteromer P24384; P25337; P28004; P28320; P32523; P33334; P33411; P36048; P38241; P40018; P40204; P40567; P40968; P43321; P53277; P53333; P54999; Q02260; Q02775; Q03375; Q03654; Q03772; Q04048; Q06091; Q06217; Q08963; Q12046; Q12309; Q12330; | 100 | 1×MG; 1×IHP; 1×GTP; 7×ZN; | |||
| Structure of a spliceosome remodeled for exon ligation |
Heteromer P25337; P28004; P33334; P33411; P36048; P38241; P40018; P40204; P40968; P43321; P53277; P53333; P54999; Q02260; Q02775; Q03375; Q03654; Q03772; Q04048; Q06217; Q12046; Q12309; Q12330; | 100 | 3×MG; 2×K; 1×IHP; 1×GTP; 6×ZN; | |||
| yeast activated spliceosome |
Heteromer P0C074; P20095; P25337; P28004; P32639; P33334; P36048; P38241; P40018; P40204; P40565; P43321; P46947; P49955; P53333; P54999; Q02260; Q03654; Q04048; Q04693; Q06217; Q06835; Q07930; Q12046; Q12309; Q12330; | 100.0 | ||||
| Cryo-EM structure of the Catalytic Step I spliceosome (C complex) at 3.4 angstrom resolution |
Heteromer P21374; P25337; P28004; P28320; P32523; P33334; P36048; P38241; P40018; P40204; P40567; P40968; P43321; P53277; P53333; P53854; P54999; Q02260; Q03375; Q03654; Q03772; Q04048; Q06091; Q06217; Q08963; Q12046; Q12309; Q12330; | 100 | 1×GTP; 6×MG; 7×ZN; | |||
| Cryo-EM structure of the intron-lariat spliceosome ready for disassembly from S.cerevisiae at 3.5 a… |
Heteromer P25337; P28004; P28320; P32523; P33334; P36048; P36118; P38241; P40018; P40204; P40567; P40968; P43321; P52868; P53131; P53277; P54999; Q02260; Q03654; Q03772; Q04048; Q06091; Q06217; Q06411; Q08963; Q12046; Q12309; Q12330; | 100 | 1×IHP; 1×GTP; 6×MG; 6×ZN; | |||
| Cryo-EM structure of the activated spliceosome (Bact complex) at 3.5 angstrom resolution |
Heteromer P0C074; P20095; P25337; P28004; P32523; P32639; P33334; P36048; P38241; P40018; P40204; P40565; P40968; P43321; P46947; P49955; P53277; P53333; P53769; P54999; Q02260; Q02554; Q02770; Q03375; Q03654; Q03772; Q04048; Q04693; Q06091; Q06217; Q06835; Q07350; Q07930; Q12046; Q12309; Q12330; Q99181; | 100 | 1×GTP; 5×MG; 13×ZN; 1×ADP; | |||
| Cryo-EM Structure of the Post-catalytic Spliceosome from Saccharomyces cerevisiae at 3.6 angstrom |
Heteromer P24384; P25337; P28004; P32523; P33334; P33411; P36048; P38241; P40018; P40204; P40567; P40968; P43321; P53277; P53333; P54999; Q02260; Q02775; Q03375; Q03654; Q03772; Q04048; Q06091; Q06217; Q08963; Q12046; Q12309; Q12330; | 100 | 1×IHP; 1×GTP; 6×MG; 6×ZN; | |||
| Cryo-EM structure of the Catalytic Step II spliceosome (C* complex) at 4.0 angstrom resolution |
Heteromer P15938; P25337; P28004; P32523; P33334; P33411; P36048; P38241; P40018; P40204; P40567; P40968; P43321; P53277; P53333; P54999; Q02260; Q03375; Q03654; Q03772; Q04048; Q06091; Q06217; Q08963; Q12046; Q12309; Q12330; | 100 | 1×GTP; 6×MG; 6×ZN; | |||
| Structure of the core of the yeast spliceosome immediately after branching |
Heteromer P21374; P25337; P28004; P28320; P33334; P36048; P38241; P40018; P40204; P40567; P43321; P53854; P54999; Q02260; Q03375; Q03654; Q03772; Q04048; Q06217; Q08963; Q12046; Q12309; Q12330; | 100.0 | 2×MG; 7×ZN; 1×GTP; | |||
| Overall structure of the yeast spliceosome immediately after branching. |
Heteromer P15938; P21374; P25337; P28004; P28320; P32523; P32639; P33334; P36048; P38241; P40018; P40204; P40567; P43321; P53854; P54999; Q02260; Q03375; Q03654; Q04048; Q06091; Q06217; Q08963; Q12046; Q12309; Q12330; | 100.0 | 2×MG; 7×ZN; 1×GTP; | |||
9 SWISS-MODEL models
| Template | Oligo-state | QMEAN | Range | Ligands | Trg-Tpl Seq id (%) | |
|---|---|---|---|---|---|---|
| 7b9v.1.M | monomer | 0.78 | 100.00 | |||
| 6jlq.1.B | monomer | 0.66 | 16.81 | |||
| 2ymu.1.A | monomer | 0.65 | 26.39 | |||
| 2ymu.1.A | monomer | 0.64 | 27.35 | |||
| 7ay0.2.A | monomer | 0.58 | 15.36 | |||
| 4nsx.1.A | monomer | 0.58 | 13.24 | |||
| 6zqb.12.A | monomer | 0.57 | 18.38 | |||
| 3mkq.1.C | monomer | 0.57 | 19.17 | |||
| 3j2t.1.A | monomer | 0.57 | 17.63 | |||