Q97W02 (DPO4_SACS2) Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)(Sulfolobus solfataricus)

DNA polymerase IV UniProtKBInterProSTRINGInteractive Modelling

352 aa; Sequence (Fasta) ; 2 identical sequences: Saccharolobus solfataricus: D0KN12, A0A0E3K6E9

Available Structures

134 Experimental Structures

DescriptionOligo-stateLigandsStructureRange
Structural insight into recruitment of translesion DNA polymerase Dpo4 to sliding clamp PCNA Heteromer
P57766; Q97Z84;
26×EDO;PEG;1PE;GOL;PGE;1-352
Assess
Complex of DNA polymerase IV and L-DNA duplexhomo-2-mer1-341
Assess
Mechanism of Template-Independent Nucleotide Incorporation Catalyzed by a Template-Dependent DNA Po…monomerCA;DDS;EDO;1-348
Assess
Complex structure of Sulfolobus solfataricus DPO4 and DNA duplex containing a hydrophobic thymine i…monomerCA;DCT;1-344
Assess
CRYSTAL STRUCTURE of DPO4 LINKER REGION P236A MUTANT WITH AN INCOMING D-dCDPmonomerYYY;CA;ACT;GOL;1-343
Assess
Crystal structures of mutant Dpo4 DNA polymerases with 8-oxoG containing DNA template-primer constr…monomerDGT;CA;1-343
Assess
Crystal structures of mutant Dpo4 DNA polymerases with 8-oxoG containing DNA template-primer constr…monomerDGT;CA;1-343
Assess
Complex structure of Sulfolobus solfataricus DPO4 and DNA duplex containing a hydrophobic thymine i…monomerCA;DCT;1-343
Assess
Complex structure of Sulfolobus solfataricus DPO4 and DNA duplex containing a hydrophobic thymine i…monomerDGT;CA;1-343
Assess
Ternary complex of Y-family DNA polymerase Dpo4 with (5'S)-8,5'-Cyclo-2'-deoxyguanosine and dTTPmonomerMG;DOC;CA;TTP;1-342
Assess
The Molecular Basis of Selectivity of Nucleoside Triphosphate Incorporation Opposite O6-Benzylguani…monomerCA;DGT;1-342
Assess
DNA Adduct Bypass Polymerization by Sulfolobus solfataricus Dpo4. Analysis and Crystal Structures o…monomerCA;1-342
Assess
Ternary complex of Y-family DNA polymerase Dpo4 with (5'S)-8,5'-Cyclo-2'-deoxyguanosine and dCTPmonomerDCP;MG;DOC;1-342
Assess
Crystal structures of mutant Dpo4 DNA polymerases with 8-oxoG containing DNA template-primer constr…monomerDGT;CA;1-342
Assess
DNA Adduct Bypass Polymerization by Sulfolobus solfataricus Dpo4. Analysis and Crystal Structures o…monomerDG;CA;1-342
Assess
The Molecular Basis of Selectivity of Nucleotide Triphosphate Incorporation Opposite O6-Benzylguani…monomerDGT;CA;1-342
Assess
Y-family DNA polymerase Dpo4 in complex with DNA containing abasic lesionmonomerCA;ATP;1-342
Assess
Bypass of a bulky adduct dG1,8 by DPO4monomerCA;NA;TRS;1-342
Assess
BINARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE AND 1, N2-ETHENOGUANINE MODIFIED DNA,…monomer1-342
Assess
Efficient and High Fidelity Incorporation of dCTP Opposite 7,8- Dihydro-8-oxodeoxyguanosine by Sulf…monomerDG;CA;1-342
Assess
Binary complex of Dpo4 bound to N2,N2-dimethyl-deoxyguanosine modified DNAmonomerMG;1-342
Assess
Replication of N2,3-Ethenoguanine by DNA PolymerasesmonomerDCP;MG;CA;1-342
Assess
Replication of N2,3-Ethenoguanine by DNA PolymerasesmonomerDCP;MG;1-342
Assess
The Molecular Basis of Selectivity of Nucleoside Triphosphate Incorporation Opposite O6-Benzylguani…monomerDGT;CA;1-342
Assess
The Molecular Basis of Selectivity of Nucleoside Triphosphate Incorporation Opposite O6-Benzylguani…monomerCA;DGT;1-342
Assess
TERNARY CRYSTAL STRUCTURES of A Y-FAMILY DNA POLYMERASE DPO4 FROM SULFOLOBUS SOLFATARICUS IN COMPLE…monomerCA;ACT;LTP;DOC;1-342
Assess
Non-productive complex of the Y-family DNA polymerase Dpo4 with dGTP skipping the M1dG adduct to pa…monomerDGT;CA;1-342
Assess
TERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE, 7,8- DIHYDRO-8-OXODEOXYGUANINE MODI…monomerDGT;MG;1-342
Assess
Ternary complex of Sulfolobus solfataricus Dpo4 DNA polymerase, O6- methylguanine modified DNA, and…monomerCA;DGT;1-342
Assess
DNA Adduct Bypass Polymerization by Sulfolobus solfataricus Dpo4. Analysis and Crystal Structures o…monomerDAD;CA;1-342
Assess
Ternary complex of Sulfolobus solfataricus Dpo4 DNA polymerase, O6- methylguanine modified DNA, and…monomerDTP;CA;1-342
Assess
Efficient and High Fidelity Incorporation of dCTP Opposite 7,8- Dihydro-8-oxodeoxyguanosine by Sulf…monomerDCT;CA;1-342
Assess
Efficient and High Fidelity Incorporation of dCTP Opposite 7,8- Dihydro-8-oxodeoxyguanosine by Sulf…monomerDGT;CA;1-342
Assess
Efficient and High Fidelity Incorporation of dCTP Opposite 7,8- Dihydro-8-oxodeoxyguanosine by Sulf…monomerDTP;CA;1-342
Assess
Ternary complex of Dpo4 bound to N2,N2-dimethyl-deoxyguanosine modified DNA with incoming dGTPmonomerDGT;MG;1-342
Assess
Post-insertion complex of the Y-family DNA polymerase Dpo4 with M1dG containing template DNAmonomerDGT;CA;1-342
Assess
Ternary complex of Sulfolobus solfataricus Dpo4 DNA polymerase, O6- methylguanine modified DNA, and…monomerDTP;CA;1-342
Assess
TERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE, 7,8- DIHYDRO-8-OXODEOXYGUANINE MODI…monomerMG;DCP;1-342
Assess
Efficient and High Fidelity Incorporation of dCTP Opposite 7,8- Dihydro-8-oxodeoxyguanosine by Sulf…monomerDCP;CA;1-342
Assess
Crystal structure of Dpo4 in complex with N-MC-dAMP opposite dTmonomer0OH;CA;1-342
Assess
Crystal structures of mutant Dpo4 DNA polymerases with 8-oxoG containing DNA template-primer constr…monomerDGT;CA;1-342
Assess
Ternary complex of Dpo4 bound to N2,N2-dimethyl-deoxyguanosine modified DNA with incoming dTTPmonomerMG;TTP;1-342
Assess
Y-family DNA polymerase Dpo4 bypassing N2-naphthyl-guanine adduct in anti orientationmonomerDGT;MG;1-342
Assess
Y-family DNA polymerase Dpo4 bypassing N2-naphthyl-guanine adduct in syn orientationmonomerDGT;MG;1-342
Assess
Replication of N2,3-Ethenoguanine by DNA PolymerasesmonomerMG;CA;NA;1-342
Assess
Crystal Structure of a Y-family DNA Polymerase in a Ternary Complex with DNA Substrates and an Inco…monomerCA;MG;ADI;1-341
Assess
Snapshots of a Y-family DNA polymerase in replication: Dpo4 in apo and binary/ternary complex formsmonomerPEG;GOL;1-341
Assess
Crystal Structure of Dpo4 in complex with DNA containing the major cisplatin lesionmonomerCA;CTP;CPT;1-341
Assess
T-3 ternary complex of Dpo4monomerDCP;CA;1-341
Assess
TT-4 ternary complex of Dpo4monomerCA;DCP;1-341
Assess
Crystal Structure of Dpo4 in complex with DNA containing the major cisplatin lesionmonomerCA;ATP;CPT;1-341
Assess
DPO with AT matchedmonomerCA;MG;DDY;1-341
Assess
Dpo4 post-insertion complex with the N-(deoxyguanosin-8-yl)-1-aminopyrene lesionmonomerDGT;CA;GTP;1-341
Assess
REPLICATION OF A CIS-SYN THYMINE DIMER AT ATOMIC RESOLUTIONmonomerCA;ATP;1-341
Assess
TERNARY CRYSTAL STRUCTURES of A Y-FAMILY DNA POLYMERASE DPO4 FROM SULFOLOBUS SOLFATARICUS IN COMPLE…monomer3TT;CA;1-341
Assess
Crystal Structure of a Y-Family DNA Polymerase in a Ternary Complex with DNA Substrates and an Inco…monomerEDO;CA;MG;DG3;1-341
Assess
Snapshots of replication through an abasic lesion: structural basis for base substitution and frame…monomerCA;DCP;1-341
Assess
Fidelity of Dpo4: effect of metal ions, nucleotide selection and pyrophosphorolysismonomerCA;MG;DTP;1-341
Assess
Snapshots of replication through an abasic lesion: structural basis for base substitution and frame…monomerCA;MG;TTP;1-341
Assess
Snapshots of a Y-family DNA polymerase in replication: Dpo4 in apo and binary/ternary complex formsmonomerCA;TMP;GOL;1-341
Assess
TERNARY CRYSTAL STRUCTURES of A Y-FAMILY DNA POLYMERASE DPO4 FROM SULFOLOBUS SOLFATARICUS IN COMPLE…monomerFTD;CA;1-341
Assess
TERNARY CRYSTAL STRUCTURES OF A Y-FAMILY DNA POLYMERASE DPO4 FROM SULFOLOBUS SOLFATARICUS in COMPLE…monomer0G8;CA;1-341
Assess
Bypass of Major Benzopyrene-dG Adduct by Y-Family DNA Polymerase with Unique Structural GapmonomerBAP;EDO;GOL;CA;POP;1-341
Assess
REPLICATION OF A CIS-SYN THYMINE DIMER AT ATOMIC RESOLUTIONmonomerCA;ATP;1-341
Assess
TERNARY CRYSTAL STRUCTURES of A Y-FAMILY DNA POLYMERASE DPO4 FROM SULFOLOBUS SOLFATARICUS IN COMPLE…monomerDCP;CA;1-341
Assess
Ternary complex of gamma-OHPDG adduct modified dna with dna (-1 primer) polymerase iv and incoming …monomerDGT;CA;1-341
Assess
Ternary structure of Dpo4 bound to G in the template base paired with incoming dCTPmonomerCA;DCP;1-341
Assess
Ternary complex of HNE Adduct modified DNA (5'-CXG-3' vs 13-mer) with Dpo4 and incoming dDGTmonomerDGT;CA;1-341
Assess
DNA Adduct Bypass Polymerization by Sulfolobus solfataricus Dpo4. Analysis and Crystal Structures o…monomerDTP;CA;1-341
Assess
Selectivity of Nucleoside Triphosphate Incorporation Opposite 1,N2-Propanodeoxyguanosine (PdG) by t…monomerCA;DTP;1-341
Assess
DPO4 with GT mismatchmonomerCA;DCT;1-341
Assess
TERNARY CRYSTAL STRUCTURES of A Y-FAMILY DNA POLYMERASE DPO4 FROM SULFOLOBUS SOLFATARICUS IN COMPLE…monomer0G4;CA;1-341
Assess
Y-family DNA polymerase Dpo4 in complex with DNA containing abasic lesionmonomerMG;ATP;1-341
Assess
Dpo4 Y12A mutant incorporating ADP opposite template dTmonomerCA;ATP;1-341
Assess
Ternary complex of HNE Adduct modified DNA (5'-TXG-3' vs 13-mer) with Dpo4 and incoming dDTPmonomerDTP;CA;1-341
Assess
Crystal structure of DPO4 extension past 8-oxoadenine (oxoA) and dTmonomerDZ4;MG;1-341
Assess
Selectivity of Nucleoside Triphosphate Incorporation Opposite 1,N2-Propanodeoxyguanosine (PdG) by t…monomerCA;DGT;1-341
Assess
Bypass of Major Benzopyrene-dG Adduct by Y-Family DNA Polymerase with Unique Structural GapmonomerPO4;CA;ATP;EDO;BAP;1-341
Assess
Crystal structure of Dpo4 in complex with DNA duplexmonomerCA;1-341
Assess
Crystal structure of DPO4 extension past 8-oxoadenine (oxoA) and dGmonomerMG;DZ4;1-341
Assess
Dpo4 polymerase pre-insertion binary complex with the N-(deoxyguanosin-8-yl)-1-aminopyrene lesionmonomerCA;1-341
Assess
Complex of DNA polymerase IV and D-DNA duplexmonomerCA;1-341
Assess
Ternary structure of Dpo4 bound to G in the template base paired with incoming dTTPmonomerCA;TTP;1-341
Assess
Ternary complex of gamma-OHPDG adduct modified dna (zero primer) with dna polymerase iv and incomin…monomerDGT;CA;1-341
Assess
Dpo4 Y12A mutant incorporating dADP opposite template dTmonomerATP;CA;1-341
Assess
Crystal structure of a Benzo[a]pyrene Diol Epoxide adduct in a ternary complex with a DNA polymerasemonomerBAP;MG;CA;DTP;1-341
Assess
Selectivity of Nucleoside Triphosphate Incorporation Opposite 1,N2-Propanodeoxyguanosine (PdG) by t…monomerCA;DGT;1-341
Assess
Ternary complex of Aflatoxin B1 Adduct modified DNA (AFB1-FAPY) with DNA Polymerase IV and incoming…monomerTTP;CA;1-341
Assess
Ternary complex of gamma-OHPDG adduct modified dna with dna (-1 primer) polymerase iv and incoming …monomerDTP;CA;1-341
Assess
Snapshots of replication through an abasic lesion: structural basis for base substitution and frame…monomerCA;DCP;1-341
Assess
Crystal structure of DPO4 with 8-oxoadenine (oxoA) and dTTP*monomer1FZ;MG;1-341
Assess
Fidelity of Dpo4: effect of metal ions, nucleotide selection and pyrophosphorolysismonomerMG;CA;POP;1-341
Assess
Crystal structure of Dpo4 in complex with S-MC-dADP opposite dTmonomer0OJ;CA;1-341
Assess
Crystal Structure of Dpo4 in complex with DNA containing the major cisplatin lesionmonomerCTP;CA;GOL;CPT;1-341
Assess
Ternary complex of Aflatoxin B1 Adduct modified DNA (AFB1-N7-Gua) with DNA Polymerase IV and incomi…monomerDTP;CA;AFN;1-341
Assess
Crystal structure of Y-family DNA polymerase Dpo4 extending from a MeFapy-dG:dC pairmonomerDTP;CA;1-341
Assess
Ternary complex of HNE Adduct modified DNA (5'-CXG-3' vs 14-mer) with Dpo4 and incoming dDGTmonomerDGT;CA;1-341
Assess
Ternary complex of HNE Adduct modified DNA (5'-TXG-3' vs 14-mer) with Dpo4 and incoming dDTPmonomerDTP;CA;1-341
Assess
Fidelity of Dpo4: effect of metal ions, nucleotide selection and pyrophosphorolysismonomerCA;MG;DGT;1-341
Assess
Ternary complex of Aflatoxin B1 Adduct modified DNA (AFB1-N7-Gua) with DNA Polymerase IV and incomi…monomerDCP;CA;AFN;1-341
Assess
Ternary complex of Aflatoxin B1 Adduct modified DNA (AFB1-FAPY) with DNA Polymerase IV and incoming…monomerDTP;CA;1-341
Assess
Ring-Opening of the -OH-PdG Adduct in Ternary Complexes with the Sulfolobus solfataricus DNA polyme…monomerDTP;CA;1-341
Assess
Ternary complex of Aflatoxin B1 Adduct modified DNA (AFB1-N7-Gua) with DNA Polymerase IV and incomi…monomerTTP;CA;AFN;1-341
Assess
Ternary structure of Dpo4 bound to N7mG in the template base paired with incoming dCTPmonomerCA;DCP;1-341
Assess
Binary complex of Aflatoxin B1 Adduct modified DNA (AFB1-FAPY) with DNA Polymerase IVmonomerCA;1-341
Assess
Crystal structure of Y-family DNA polymerase Dpo4 bypassing a MeFapy-dG adductmonomerDTP;CA;1-341
Assess
Crystal structure of DPO4 with 8-oxoadenine (oxoA) and dGTP*monomerXG4;MG;GOL;1-341
Assess
Dpo4 extension ternary complex with 3'-terminal primer T base opposite the 1-methylguanine (M1G) le…monomerDGT;CA;2-341
Assess
oxoG-modified Insertion Ternary ComplexmonomerCA;DCP;2-341
Assess
Dpo4 post-extension ternary complex with the correct C opposite the 2-aminofluorene-guanine [AF]G l…monomerTTP;CA;AF;2-341
Assess
Dpo4 post-extension ternary complex with misinserted A opposite the 2-aminofluorene-guanine [AF]G l…monomerTTP;CA;AF;2-341
Assess
Dpo4 extension ternary complex with 3'-terminal primer C base opposite the 1-methylguanine (MG1) le…monomerDGT;CA;EPE;2-341
Assess
oxoG-modified Preinsertion Binary ComplexmonomerCA;2-341
Assess
Dpo4 extension ternary complex with oxoG(syn)-A(anti) and oxoG(anti)-A(syn) pairsmonomerDGT;CA;2-341
Assess
Dpo4 extension ternary complex with 3'-terminal primer C base opposite the 3-methylcytosine (m3c) l…monomerDGT;CA;EPE;2-341
Assess
Dpo4 extension ternary complex with disordered A opposite an oxoG in anti conformationmonomerDGT;CA;NA;2-341
Assess
oxoG-modified Postinsertion Binary ComplexmonomerCA;2-341
Assess
Unmodified preinsertion binary complexmonomerCA;2-341
Assess
Dpo4 extension ternary complex with 3'-terminal primer A base opposite the 3-methylcytosine (m3c) l…monomerDGT;EPE;CA;2-341
Assess
Dpo4 extension ternary complex with a C base opposite the 2-aminofluorene-guanine [AF]G lesionmonomerDGT;CA;AF;2-341
Assess
Dpo4 extension ternary complex with oxoG(anti)-G(syn) pairmonomerDGT;CA;2-341
Assess
Dpo4 extension ternary complex with oxoG(anti)-T(anti) pairmonomerDGT;CA;2-341
Assess
Unmodified Insertion Ternary ComplexmonomerCA;DCP;2-341
Assess
Dpo4 extension ternary complex with 3'-terminal primer A base opposite the 1-methylguanine (m1g) le…monomerDGT;CA;EPE;2-341
Assess
Dpo4 extension ternary complex with 3'-terminal primer t base opposite the 3-methylcytosine (m3c) l…monomerDGT;CA;2-341
Assess
Dpo4 extension ternary complex with 3'-terminal primer G base opposite the 3-methylcytosine (m3c) l…monomerDGT;CA;2-341
Assess
Dpo4 extension ternary complex with the oxoG(anti)-C(anti) pairmonomerDGT;CA;2-341
Assess
Dpo4 extension ternary complex with misinserted A opposite the 2-aminofluorene-guanine [AF]G lesionmonomerDGT;CA;EPE;AF;2-341
Assess
Dpo4 extension ternary complex with 3'-terminal primer G base opposite the 1-methylguanine (M1G) le…monomerDGT;CA;2-341
Assess
Y-family DNA polymerase chimera Dpo4-Dpo4-DbhmonomerCA;4-247
Assess
Y-family DNA polymerase chimera Dbh-Dpo4-Dpo4 #1monomerDCP;CA;231-341
Assess
Y-family DNA polymerase chimera Dbh-Dpo4-Dpo4 #2monomerCA;DCP;231-341
Assess
Y-family DNA polymerase chimera Dbh-Dbh-Dpo4monomerCA;248-341
Assess
Y-family DNA polymerase chimera Dbh-Dpo4-DbhmonomerDCP;CA;231-247
Assess

2 SWISS-MODEL models

Oligo-stateLigandsQMEANDisCoTemplateRangeSeq id (%)
monomerCA;0.871jx4.1.C1-341
100.00
Assess
monomer0.843fds.1.A1-352
100.00
Assess