Q9ULU4 | SWISS-MODEL Repository

Q9ULU4 (ZMYD8_HUMAN) Homo sapiens (Human)

MYND-type zinc finger-containing chromatin reader ZMYND8 UniProtKB AFDB90v4 InterPro STRING Interactive Modelling

1186 aa; Sequence (Fasta) ; (Isoform 2; Isoform 3; Isoform 4; Isoform 5; Isoform 6; Isoform 7; Isoform 8; Isoform 9; Isoform 10; Isoform 11; Isoform 12; Isoform 13; Isoform 14; Isoform 15; Isoform 16; Isoform 17; Isoform 18; Isoform 19; Isoform 20; Isoform 21; Isoform 22; Isoform 23)

It is possible new templates exist for this target since these models were created.

Available Structures

5 Experimental Structures

Description	PDB ID	Oligo-state	Range	Ligands
Crystal structure of ZMYND8 PHD-BROMO-PWWP tandem in complex with Drebrin ADF-H domain	5y1z SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer Q16643;	87-390	4×SO4; 3×ZN;
Assess
Structural basis of RACK7 PHD to read a pediatric glioblastoma-associated histone mutation H3.3G34R	7cwh SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P84243;	83-143	2×ZN;
Assess
Crystal Structure of the leucine zipper of human PRKCBP1	5mq4 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	homo-2-mer	952-1064	2×SO4; 4×ZN;
Assess
Crystal structure of human ZMYND8 PHD-Bromo-PWWP domain	5b73 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	86-403	3×ZN;
Assess
Crystal structure of the PHD-Bromo-PWWP cassette of human PRKCBP1	4cos SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	86-399	3×ZN; 2×DIO;
Assess

3 SWISS-MODEL models

Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
5y1z.2.B	monomer	0.84	85-391	3×ZN;	100.00
Assess
2f6j.1.A	monomer	0.63	86-253	1×ZN;	25.47
Assess
3o35.1.A	monomer	0.62	86-252	2×ZN;	31.33
Assess

Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

63 SWISS-MODEL models built on isoform sequence

Template	Isoform	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
Isoform 2	5mq4.1.A	homo-2-mer	0.58	380-492	4×ZN;	100.00
Assess
Isoform 3	5y1z.1.B	monomer	0.83	1-245	1×ZN;	100.00
Assess
Isoform 3	6gyr.2.A	monomer	0.55	2-130		18.60
Assess
Isoform 3	5mq4.2.A	monomer	0.50	763-873	2×ZN;	100.00
Assess
Isoform 4	5mq4.1.A	homo-2-mer	0.56	530-642	4×ZN;	100.00
Assess
Isoform 5	5y1z.2.B	monomer	0.83	80-386	3×ZN;	100.00
Assess
Isoform 5	2f6j.1.A	monomer	0.63	81-248	1×ZN;	25.47
Assess
Isoform 5	3o35.1.A	monomer	0.63	81-247	2×ZN;	31.33
Assess
Isoform 6	5y1z.1.B	monomer	0.82	1-245	1×ZN;	100.00
Assess
Isoform 6	6gyr.2.A	monomer	0.54	2-129		18.75
Assess
Isoform 6	5mq4.2.A	monomer	0.50	763-873	2×ZN;	100.00
Assess
Isoform 7	5y1z.2.B	monomer	0.83	105-411	3×ZN;	100.00
Assess
Isoform 7	2f6j.1.A	monomer	0.63	106-273	1×ZN;	25.47
Assess
Isoform 7	4ybm.1.A	monomer	0.59	106-272	2×ZN;	31.33
Assess
Isoform 8	5y1z.2.B	monomer	0.84	105-411	3×ZN;	100.00
Assess
Isoform 8	2f6j.1.A	monomer	0.63	106-273	1×ZN;	25.47
Assess
Isoform 8	4yc9.1.A	monomer	0.61	106-272	2×ZN;	31.33
Assess
Isoform 9	5y1z.2.B	monomer	0.84	85-391	3×ZN;	100.00
Assess
Isoform 9	2f6j.1.A	monomer	0.62	86-253	1×ZN;	25.47
Assess
Isoform 9	4ybm.1.A	monomer	0.59	86-252	2×ZN;	31.33
Assess
Isoform 10	5y1z.2.B	monomer	0.83	105-411	3×ZN;	100.00
Assess
Isoform 10	2f6j.1.A	monomer	0.63	106-273	1×ZN;	25.47
Assess
Isoform 10	4ybm.1.A	monomer	0.59	106-272	2×ZN;	31.33
Assess
Isoform 11	5y1z.2.B	monomer	0.84	85-391	3×ZN;	100.00
Assess
Isoform 11	2f6j.1.A	monomer	0.62	86-253	1×ZN;	25.47
Assess
Isoform 11	4ybm.1.A	monomer	0.59	86-252	2×ZN;	31.33
Assess
Isoform 12	5y1z.2.B	monomer	0.83	105-411	3×ZN;	100.00
Assess
Isoform 12	2f6j.1.A	monomer	0.63	106-273	1×ZN;	25.47
Assess
Isoform 12	3o36.2.A	monomer	0.61	106-272	2×ZN;	31.33
Assess
Isoform 13	5y1z.2.B	monomer	0.83	105-411	3×ZN;	100.00
Assess
Isoform 13	2f6j.1.A	monomer	0.63	106-273	1×ZN;	25.47
Assess
Isoform 13	4ybm.1.A	monomer	0.59	106-272	2×ZN;	31.33
Assess
Isoform 14	5y1z.2.B	monomer	0.83	80-386	3×ZN;	100.00
Assess
Isoform 14	2f6j.1.A	monomer	0.63	81-248	1×ZN;	25.47
Assess
Isoform 14	5hda.1.A	monomer	0.62	919-1014	2×ZN;	38.95
Assess
Isoform 14	4ybm.1.A	monomer	0.60	81-247	2×ZN;	31.33
Assess
Isoform 15	5y1z.2.B	monomer	0.83	80-386	3×ZN;	100.00
Assess
Isoform 15	2f6j.1.A	monomer	0.63	81-248	1×ZN;	25.47
Assess
Isoform 15	4ybm.1.A	monomer	0.61	81-247	2×ZN;	31.33
Assess
Isoform 16	5y1z.2.B	monomer	0.83	80-386	3×ZN;	100.00
Assess
Isoform 16	2f6j.1.A	monomer	0.63	81-248	1×ZN;	25.47
Assess
Isoform 16	4ybm.1.A	monomer	0.60	81-247	2×ZN;	31.33
Assess
Isoform 17	5y1z.2.B	monomer	0.84	80-386	3×ZN;	100.00
Assess
Isoform 17	2f6j.1.A	monomer	0.63	81-247	1×ZN;	25.63
Assess
Isoform 17	4ybm.1.A	monomer	0.60	81-247	2×ZN;	31.33
Assess
Isoform 18	5y1z.2.B	monomer	0.83	80-386	3×ZN;	100.00
Assess
Isoform 18	2f6j.1.A	monomer	0.64	81-248	1×ZN;	25.47
Assess
Isoform 18	3o35.1.A	monomer	0.63	81-247	2×ZN;	31.33
Assess
Isoform 19	5y1z.2.B	monomer	0.83	112-418	3×ZN;	100.00
Assess
Isoform 19	2f6j.1.A	monomer	0.63	113-280	1×ZN;	25.47
Assess
Isoform 19	4ybm.1.A	monomer	0.59	113-279	2×ZN;	31.33
Assess
Isoform 20	5y1z.2.B	monomer	0.83	85-391	3×ZN;	100.00
Assess
Isoform 20	2f6j.1.A	monomer	0.63	86-253	1×ZN;	25.47
Assess
Isoform 20	4yc9.1.A	monomer	0.62	86-252	2×ZN;	31.33
Assess
Isoform 21	5y1z.2.B	monomer	0.83	60-366	3×ZN;	100.00
Assess
Isoform 21	2f6j.1.A	monomer	0.63	61-228	1×ZN;	25.47
Assess
Isoform 21	4yc9.1.A	monomer	0.61	61-227	2×ZN;	31.33
Assess
Isoform 22	5y1z.2.B	monomer	0.83	105-411	3×ZN;	100.00
Assess
Isoform 22	2f6j.1.A	monomer	0.63	106-273	1×ZN;	25.47
Assess
Isoform 22	3o35.1.A	monomer	0.61	106-272	2×ZN;	31.33
Assess
Isoform 23	5y1z.2.B	monomer	0.75	60-328	3×ZN;	100.00
Assess
Isoform 23	3o35.1.A	monomer	0.59	61-189	1×ZN;	38.28
Assess
Isoform 23	2f6j.1.A	monomer	0.51	61-190		27.91
Assess

Q9ULU4 (ZMYD8_HUMAN) Homo sapiens (Human)

MYND-type zinc finger-containing chromatin reader ZMYND8 UniProtKBAFDB90v4InterProSTRINGInteractive Modelling

Available Structures

5 Experimental Structures

3 SWISS-MODEL models

63 SWISS-MODEL models built on isoform sequence

Alignments

Background

Resolution

MYND-type zinc finger-containing chromatin reader ZMYND8 UniProtKB AFDB90v4 InterPro STRING Interactive Modelling