SMTL ID : 2f6j.1

Crystal structure of PHD finger-linker-bromodomain fragment of human BPTF in the H3(1-15)K4me3 bound state

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-oligomer

Ligands

6 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.11, C.13, H.34, C.37 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.11, A:C.13, A:H.34, A:C.37 ZN.2: 5 residues within 4Å: Chain A: C.26, C.29, Y.33, C.53, C.56 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.26, A:C.29, A:C.53, A:C.56 ZN.3: 4 residues within 4Å: Chain B: C.11, C.13, H.34, C.37 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.11, B:C.13, B:H.34, B:C.37 ZN.4: 5 residues within 4Å: Chain B: C.26, C.29, Y.33, C.53, C.56 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.26, B:C.29, B:C.53, B:C.56 ZN.5: 4 residues within 4Å: Chain C: C.11, C.13, H.34, C.37 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.11, C:C.13, C:H.34, C:C.37 ZN.6: 5 residues within 4Å: Chain C: C.26, C.29, Y.33, C.53, C.56 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.26, C:C.29, C:C.53, C:C.56

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, H. et al., Molecular basis for site-specific read-out of histone H3K4me3 by the BPTF PHD finger of NURF. Nature (2006)

Release Date

2006-07-11

Peptides

bromodomain PHD finger transcription factor: ABC
histone H3, N-terminal: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
P

bromodomain PHD finger transcription factor

histone H3, N-terminal

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