SMTL ID : 105m.1

SPERM WHALE MYOGLOBIN N-BUTYL ISOCYANIDE AT PH 9.0

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.02 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: A.57, S.58, E.59, D.60 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.59, A:D.60

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.2: 14 residues within 4Å: Chain A: T.39, K.42, F.43, R.45, H.64, V.68, L.72, L.89, S.92, H.93, H.97, I.99, Y.103 Ligands: NBN.3 20 PLIP interactions: 20 interactions with chain A, Hydrophobic interactions: A:F.43, A:F.43, A:F.43, A:V.68, A:L.72, A:L.89, A:I.99, A:I.99, A:Y.103 Hydrogen bonds: A:S.92 Water bridges: A:R.45 Salt bridges: A:R.45, A:H.93, A:K.96, A:H.97 pi-Stacking: A:H.64, A:H.93, A:H.97 pi-Cation interactions: A:H.64 Metal complexes: A:H.93

1 x NBN: N-BUTYL ISOCYANIDE(Non-covalent)

NBN.3: 7 residues within 4Å: Chain A: L.29, L.32, F.43, H.64, V.68, I.107 Ligands: HEM.2 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.29, A:L.32, A:F.43, A:I.107

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Smith, R.D., Correlations between Bound N-Alkyl Isocyanide Orientations and Pathways for Ligand Binding in Recombinant Myoglobins. Thesis, Rice (1999)

Release Date

1998-04-08

Peptides

MYOGLOBIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

MYOGLOBIN

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