SMTL ID : 1jp9.1

Sperm Whale met-Myoglobin (low temperature; high pressure)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: R.45, K.63, H.64, T.67 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.67 Water bridges: A:R.45, A:R.45, A:T.67 Salt bridges: A:R.45, A:H.64 SO4.2: 3 residues within 4Å: Chain A: K.34, T.51, E.52 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.52 Salt bridges: A:K.34 SO4.3: 3 residues within 4Å: Chain A: H.119, P.120, G.121 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.121 Water bridges: A:D.122, A:D.122 SO4.4: 8 residues within 4Å: Chain A: L.9, G.121, D.122, F.123, G.124, A.125, D.126, A.127 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.122, A:G.124, A:D.126, A:A.127 Water bridges: A:A.125, A:A.125 SO4.5: 2 residues within 4Å: Chain A: K.79, H.81 4 PLIP interactions: 4 interactions with chain A Water bridges: A:K.79, A:K.79 Salt bridges: A:K.79, A:H.81

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.6: 17 residues within 4Å: Chain A: T.39, K.42, F.43, R.45, H.64, T.67, V.68, A.71, L.89, S.92, H.93, H.97, I.99, Y.103, L.104, I.107, F.138 26 PLIP interactions: 25 interactions with chain A, 1 Ligand-Water interactions, Hydrophobic interactions: A:F.43, A:F.43, A:F.43, A:F.43, A:T.67, A:V.68, A:A.71, A:L.89, A:I.99, A:Y.103, A:I.107, A:F.138, A:F.138 Hydrogen bonds: A:S.92 Water bridges: A:R.45, A:P.88, A:K.96 Salt bridges: A:R.45, A:H.93, A:H.97 pi-Stacking: A:H.64, A:H.93, A:H.93, A:H.97 Metal complexes: A:H.93, H2O.6

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Urayama, P. et al., Probing substates in sperm whale myoglobin using high-pressure crystallography. Structure (2002)

Release Date

2002-01-16

Peptides

myoglobin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

myoglobin

Related Entries With Identical Sequence