SMTL ID : 1l2k.1

Neutron Structure Determination of Sperm Whale Met-Myoglobin at 1.5A Resolution.

Coordinates

PDB Format

Method

NEUTRON DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: A.57, S.58, E.59, D.60 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:S.58, A:E.59, A:D.60, A:D.60 Water bridges: A:H.48, A:H.48, A:H.48, A:H.48 SO4.3: 4 residues within 4Å: Chain A: R.45, K.63, H.64, T.67 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:H.64, A:T.67 Water bridges: A:R.45, A:T.67 Salt bridges: A:R.45, A:H.64

1 x ND4: AMMONIUM CATION WITH D(Non-covalent)

ND4.2: 3 residues within 4Å: Chain A: A.84, K.87, P.88 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.84

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.4: 21 residues within 4Å: Chain A: L.32, F.33, T.39, K.42, F.43, R.45, H.64, T.67, V.68, A.71, L.72, L.89, S.92, H.93, H.97, I.99, Y.103, L.104, I.107, I.111, F.138 23 PLIP interactions: 21 interactions with chain A, 2 Ligand-Water interactions, Hydrophobic interactions: A:T.39, A:F.43, A:F.43, A:F.43, A:F.43, A:T.67, A:V.68, A:A.71, A:L.89, A:H.97, A:I.99, A:Y.103, A:L.104, A:I.107 Water bridges: A:R.45, A:H.97 Salt bridges: A:R.45, A:H.93, A:H.97 pi-Cation interactions: A:H.97 Metal complexes: A:H.93, H2O.1, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ostermann, A. et al., Hydrogen and deuterium in myoglobin as seen by a neutron structure determination at 1.5 A resolution. Biophys.Chem. (2002)

Release Date

2002-08-21

Peptides

MYOGLOBIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

MYOGLOBIN

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