SMTL ID : 1bvc.1

STRUCTURE OF A BILIVERDIN APOMYOGLOBIN COMPLEX (FORM D) AT 118 K

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 2 residues within 4Å: Chain A: G.80, H.81 5 PLIP interactions: 5 interactions with chain A Water bridges: A:K.79, A:H.81, A:H.81, A:H.81 Salt bridges: A:H.81 PO4.2: 2 residues within 4Å: Chain A: H.113, S.117 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.117 Water bridges: A:R.31 Salt bridges: A:H.113 PO4.3: 3 residues within 4Å: Chain A: K.16, H.119, D.122 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.118, A:R.118 Salt bridges: A:K.16, A:H.119 PO4.4: 3 residues within 4Å: Chain A: H.12, K.16, D.122 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.122 Water bridges: A:H.12, A:H.12, A:H.12 Salt bridges: A:H.12, A:K.16

1 x BLA: BILIVERDINE IX ALPHA(Non-covalent)

BLA.5: 17 residues within 4Å: Chain A: T.39, K.42, F.43, H.64, T.67, V.68, A.71, L.72, L.89, S.92, H.93, H.97, I.99, Y.103, L.104, I.107, F.138 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:F.43, A:T.67, A:V.68, A:L.72, A:L.89, A:L.89, A:I.99, A:I.99, A:Y.103, A:I.107, A:F.138 Hydrogen bonds: A:S.92, A:H.93, A:H.93 Water bridges: A:H.64, A:S.92, A:H.97 Salt bridges: A:R.45, A:H.93, A:H.97 pi-Stacking: A:H.64, A:H.97

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wagner, U.G. et al., Structure determination of the biliverdin apomyoglobin complex: crystal structure analysis of two crystal forms at 1.4 and 1.5 A resolution. J.Mol.Biol. (1995)

Release Date

1995-07-31

Peptides

APOMYOGLOBIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

APOMYOGLOBIN

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