SMTL ID : 1vxh.1

NATIVE SPERM WHALE MYOGLOBIN

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: A.57, S.58, E.59, D.60 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.59, A:D.60 Water bridges: A:H.48, A:A.57 SO4.2: 3 residues within 4Å: Chain A: R.45, H.64, T.67 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.63, A:T.67 Water bridges: A:R.45, A:T.67 Salt bridges: A:R.45, A:H.64

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.3: 18 residues within 4Å: Chain A: T.39, K.42, F.43, R.45, H.64, T.67, V.68, A.71, L.89, S.92, H.93, K.96, H.97, I.99, Y.103, L.104, I.107, F.138 23 PLIP interactions: 22 interactions with chain A, 1 Ligand-Water interactions, Hydrophobic interactions: A:F.43, A:F.43, A:F.43, A:T.67, A:V.68, A:A.71, A:L.89, A:I.99, A:Y.103, A:L.104, A:I.107, A:F.138, A:F.138 Hydrogen bonds: A:S.92 Water bridges: A:R.45 Salt bridges: A:R.45, A:H.93, A:K.96, A:H.97 pi-Stacking: A:H.64, A:H.97 Metal complexes: A:H.93, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, F. et al., Crystal structures of CO-, deoxy- and met-myoglobins at various pH values. J.Mol.Biol. (1996)

Release Date

1996-08-01

Peptides

MYOGLOBIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

MYOGLOBIN

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