SMTL ID : 1aym.2 (3 other biounits)

HUMAN RHINOVIRUS 16 COAT PROTEIN AT HIGH RESOLUTION

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

hetero-5-5-5-5-mer

Ligands

5 x ZN: ZINC ION(Non-covalent)

ZN.1: 9 residues within 4Å: Chain A: H.134 Chain E: H.134 Chain I: H.134 Chain M: H.134 Chain Q: H.134 Ligands: ZN.4, ZN.7, ZN.10, ZN.13 5 PLIP interactions: 1 interactions with chain Q, 1 interactions with chain E, 1 interactions with chain I, 1 interactions with chain A, 1 interactions with chain M Metal complexes: Q:H.134, E:H.134, I:H.134, A:H.134, M:H.134 ZN.4: 9 residues within 4Å: Chain A: H.134 Chain E: H.134 Chain I: H.134 Chain M: H.134 Chain Q: H.134 Ligands: ZN.1, ZN.7, ZN.10, ZN.13 5 PLIP interactions: 1 interactions with chain Q, 1 interactions with chain E, 1 interactions with chain I, 1 interactions with chain A, 1 interactions with chain M Metal complexes: Q:H.134, E:H.134, I:H.134, A:H.134, M:H.134 ZN.7: 9 residues within 4Å: Chain A: H.134 Chain E: H.134 Chain I: H.134 Chain M: H.134 Chain Q: H.134 Ligands: ZN.1, ZN.4, ZN.10, ZN.13 5 PLIP interactions: 1 interactions with chain Q, 1 interactions with chain E, 1 interactions with chain I, 1 interactions with chain A, 1 interactions with chain M Metal complexes: Q:H.134, E:H.134, I:H.134, A:H.134, M:H.134 ZN.10: 9 residues within 4Å: Chain A: H.134 Chain E: H.134 Chain I: H.134 Chain M: H.134 Chain Q: H.134 Ligands: ZN.1, ZN.4, ZN.7, ZN.13 5 PLIP interactions: 1 interactions with chain Q, 1 interactions with chain E, 1 interactions with chain I, 1 interactions with chain A, 1 interactions with chain M Metal complexes: Q:H.134, E:H.134, I:H.134, A:H.134, M:H.134 ZN.13: 9 residues within 4Å: Chain A: H.134 Chain E: H.134 Chain I: H.134 Chain M: H.134 Chain Q: H.134 Ligands: ZN.1, ZN.4, ZN.7, ZN.10 5 PLIP interactions: 1 interactions with chain Q, 1 interactions with chain E, 1 interactions with chain I, 1 interactions with chain A, 1 interactions with chain M Metal complexes: Q:H.134, E:H.134, I:H.134, A:H.134, M:H.134

5 x DAO: LAURIC ACID(Non-covalent)

DAO.2: 10 residues within 4Å: Chain A: I.98, N.99, L.100, S.120, I.122, L.181, Y.190, N.212, M.214, H.260 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:I.98, A:I.98, A:L.100, A:I.122, A:I.122, A:L.181, A:Y.190 Hydrogen bonds: A:L.100, A:N.212 Salt bridges: A:H.260 DAO.5: 10 residues within 4Å: Chain E: I.98, N.99, L.100, S.120, I.122, L.181, Y.190, N.212, M.214, H.260 10 PLIP interactions: 10 interactions with chain E Hydrophobic interactions: E:I.98, E:I.98, E:L.100, E:I.122, E:I.122, E:L.181, E:Y.190 Hydrogen bonds: E:L.100, E:N.212 Salt bridges: E:H.260 DAO.8: 10 residues within 4Å: Chain I: I.98, N.99, L.100, S.120, I.122, L.181, Y.190, N.212, M.214, H.260 10 PLIP interactions: 10 interactions with chain I Hydrophobic interactions: I:I.98, I:I.98, I:L.100, I:I.122, I:I.122, I:L.181, I:Y.190 Hydrogen bonds: I:L.100, I:N.212 Salt bridges: I:H.260 DAO.11: 10 residues within 4Å: Chain M: I.98, N.99, L.100, S.120, I.122, L.181, Y.190, N.212, M.214, H.260 10 PLIP interactions: 10 interactions with chain M Hydrophobic interactions: M:I.98, M:I.98, M:L.100, M:I.122, M:I.122, M:L.181, M:Y.190 Hydrogen bonds: M:L.100, M:N.212 Salt bridges: M:H.260 DAO.14: 10 residues within 4Å: Chain Q: I.98, N.99, L.100, S.120, I.122, L.181, Y.190, N.212, M.214, H.260 10 PLIP interactions: 10 interactions with chain Q Hydrophobic interactions: Q:I.98, Q:I.98, Q:L.100, Q:I.122, Q:I.122, Q:L.181, Q:Y.190 Hydrogen bonds: Q:L.100, Q:N.212 Salt bridges: Q:H.260

5 x MYR: MYRISTIC ACID(Covalent)

MYR.3: 11 residues within 4Å: Chain D: G.1, N.30 Chain E: Y.6 Chain H: Y.26, F.27, I.29, Y.31 Chain L: F.27 Chain O: L.2 Ligands: MYR.6, MYR.15 2 PLIP interactions: 1 interactions with chain L, 1 interactions with chain O Hydrophobic interactions: L:F.27, O:L.2 MYR.6: 11 residues within 4Å: Chain H: G.1, N.30 Chain I: Y.6 Chain L: Y.26, F.27, I.29, Y.31 Chain P: F.27 Chain S: L.2 Ligands: MYR.3, MYR.9 2 PLIP interactions: 1 interactions with chain S, 1 interactions with chain P Hydrophobic interactions: S:L.2, P:F.27 MYR.9: 11 residues within 4Å: Chain C: L.2 Chain L: G.1, N.30 Chain M: Y.6 Chain P: Y.26, F.27, I.29, Y.31 Chain T: F.27 Ligands: MYR.6, MYR.12 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain T Hydrophobic interactions: C:L.2, T:F.27 MYR.12: 11 residues within 4Å: Chain D: F.27 Chain G: L.2 Chain P: G.1, N.30 Chain Q: Y.6 Chain T: Y.26, F.27, I.29, Y.31 Ligands: MYR.9, MYR.15 2 PLIP interactions: 1 interactions with chain G, 1 interactions with chain D Hydrophobic interactions: G:L.2, D:F.27 MYR.15: 11 residues within 4Å: Chain A: Y.6 Chain D: Y.26, F.27, I.29, Y.31 Chain H: F.27 Chain K: L.2 Chain T: G.1, N.30 Ligands: MYR.3, MYR.12 2 PLIP interactions: 1 interactions with chain H, 1 interactions with chain K Hydrophobic interactions: H:F.27, K:L.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hadfield, A.T. et al., The refined structure of human rhinovirus 16 at 2.15 A resolution: implications for the viral life cycle. Structure (1997)

Release Date

1998-01-21

Peptides

HUMAN RHINOVIRUS 16 COAT PROTEIN: AEIMQ
HUMAN RHINOVIRUS 16 COAT PROTEIN: BFJNR
HUMAN RHINOVIRUS 16 COAT PROTEIN: CGKOS
HUMAN RHINOVIRUS 16 COAT PROTEIN: DHLPT

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
1

E
1

I
1

M
1

Q
1

B
2

F
2

J
2

N
2

R
2

C
3

G
3

K
3

O
3

S
3

D
4

H
4

L
4

P
4

T
4

HUMAN RHINOVIRUS 16 COAT PROTEIN

HUMAN RHINOVIRUS 16 COAT PROTEIN

HUMAN RHINOVIRUS 16 COAT PROTEIN

HUMAN RHINOVIRUS 16 COAT PROTEIN

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