SMTL ID : 1aym.3 (3 other biounits)

HUMAN RHINOVIRUS 16 COAT PROTEIN AT HIGH RESOLUTION

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

hetero-6-6-6-6-mer

Ligands

6 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain A: H.134 Chain E: H.134 Ligands: ZN.4 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain E Metal complexes: A:H.134, E:H.134 ZN.4: 3 residues within 4Å: Chain A: H.134 Chain E: H.134 Ligands: ZN.1 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain E Metal complexes: A:H.134, E:H.134 ZN.7: 3 residues within 4Å: Chain I: H.134 Chain M: H.134 Ligands: ZN.10 2 PLIP interactions: 1 interactions with chain M, 1 interactions with chain I Metal complexes: M:H.134, I:H.134 ZN.10: 3 residues within 4Å: Chain I: H.134 Chain M: H.134 Ligands: ZN.7 2 PLIP interactions: 1 interactions with chain M, 1 interactions with chain I Metal complexes: M:H.134, I:H.134 ZN.13: 3 residues within 4Å: Chain Q: H.134 Chain U: H.134 Ligands: ZN.16 2 PLIP interactions: 1 interactions with chain Q, 1 interactions with chain U Metal complexes: Q:H.134, U:H.134 ZN.16: 3 residues within 4Å: Chain Q: H.134 Chain U: H.134 Ligands: ZN.13 2 PLIP interactions: 1 interactions with chain Q, 1 interactions with chain U Metal complexes: Q:H.134, U:H.134

6 x DAO: LAURIC ACID(Non-covalent)

DAO.2: 10 residues within 4Å: Chain A: I.98, N.99, L.100, S.120, I.122, L.181, Y.190, N.212, M.214, H.260 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:I.98, A:I.98, A:L.100, A:I.122, A:I.122, A:L.181, A:Y.190 Hydrogen bonds: A:L.100, A:N.212 Salt bridges: A:H.260 DAO.5: 10 residues within 4Å: Chain E: I.98, N.99, L.100, S.120, I.122, L.181, Y.190, N.212, M.214, H.260 10 PLIP interactions: 10 interactions with chain E Hydrophobic interactions: E:I.98, E:I.98, E:L.100, E:I.122, E:I.122, E:L.181, E:Y.190 Hydrogen bonds: E:L.100, E:N.212 Salt bridges: E:H.260 DAO.8: 10 residues within 4Å: Chain I: I.98, N.99, L.100, S.120, I.122, L.181, Y.190, N.212, M.214, H.260 10 PLIP interactions: 10 interactions with chain I Hydrophobic interactions: I:I.98, I:I.98, I:L.100, I:I.122, I:I.122, I:L.181, I:Y.190 Hydrogen bonds: I:L.100, I:N.212 Salt bridges: I:H.260 DAO.11: 10 residues within 4Å: Chain M: I.98, N.99, L.100, S.120, I.122, L.181, Y.190, N.212, M.214, H.260 10 PLIP interactions: 10 interactions with chain M Hydrophobic interactions: M:I.98, M:I.98, M:L.100, M:I.122, M:I.122, M:L.181, M:Y.190 Hydrogen bonds: M:L.100, M:N.212 Salt bridges: M:H.260 DAO.14: 10 residues within 4Å: Chain Q: I.98, N.99, L.100, S.120, I.122, L.181, Y.190, N.212, M.214, H.260 10 PLIP interactions: 10 interactions with chain Q Hydrophobic interactions: Q:I.98, Q:I.98, Q:L.100, Q:I.122, Q:I.122, Q:L.181, Q:Y.190 Hydrogen bonds: Q:L.100, Q:N.212 Salt bridges: Q:H.260 DAO.17: 10 residues within 4Å: Chain U: I.98, N.99, L.100, S.120, I.122, L.181, Y.190, N.212, M.214, H.260 10 PLIP interactions: 10 interactions with chain U Hydrophobic interactions: U:I.98, U:I.98, U:L.100, U:I.122, U:I.122, U:L.181, U:Y.190 Hydrogen bonds: U:L.100, U:N.212 Salt bridges: U:H.260

6 x MYR: MYRISTIC ACID(Covalent)

MYR.3: 8 residues within 4Å: Chain D: G.1, N.30 Chain E: Y.6 Chain H: Y.26, F.27, I.29, Y.31 Ligands: MYR.6 No protein-ligand interaction detected (PLIP) MYR.6: 3 residues within 4Å: Chain H: G.1, N.30 Ligands: MYR.3 No protein-ligand interaction detected (PLIP) MYR.9: 3 residues within 4Å: Chain L: G.1, N.30 Ligands: MYR.12 No protein-ligand interaction detected (PLIP) MYR.12: 8 residues within 4Å: Chain I: Y.6 Chain L: Y.26, F.27, I.29, Y.31 Chain P: G.1, N.30 Ligands: MYR.9 No protein-ligand interaction detected (PLIP) MYR.15: 8 residues within 4Å: Chain T: G.1, N.30 Chain U: Y.6 Chain X: Y.26, F.27, I.29, Y.31 Ligands: MYR.18 No protein-ligand interaction detected (PLIP) MYR.18: 3 residues within 4Å: Chain X: G.1, N.30 Ligands: MYR.15 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hadfield, A.T. et al., The refined structure of human rhinovirus 16 at 2.15 A resolution: implications for the viral life cycle. Structure (1997)

Release Date

1998-01-21

Peptides

HUMAN RHINOVIRUS 16 COAT PROTEIN: AEIMQU
HUMAN RHINOVIRUS 16 COAT PROTEIN: BFJNRV
HUMAN RHINOVIRUS 16 COAT PROTEIN: CGKOSW
HUMAN RHINOVIRUS 16 COAT PROTEIN: DHLPTX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
1

E
1

I
1

M
1

Q
1

U
1

B
2

F
2

J
2

N
2

R
2

V
2

C
3

G
3

K
3

O
3

S
3

W
3

D
4

H
4

L
4

P
4

T
4

X
4

HUMAN RHINOVIRUS 16 COAT PROTEIN

HUMAN RHINOVIRUS 16 COAT PROTEIN

HUMAN RHINOVIRUS 16 COAT PROTEIN

HUMAN RHINOVIRUS 16 COAT PROTEIN

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