SMTL ID : 1ncr.1 (3 other biounits)

The structure of Rhinovirus 16 when complexed with pleconaril, an antiviral compound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-functional Binders)

ZN.1: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

1 x W11: 3-{3,5-DIMETHYL-4-[3-(3-METHYL-ISOXAZOL-5-YL)-PROPOXY]-PHENYL}-5-TRIFLUOROMETHYL-[1,2,4]OXADIAZOLE(Non-covalent)

W11.2: 17 residues within 4Å: Chain A: I.98, L.100, I.122, M.124, Y.142, M.143, Y.144, A.166, S.167, V.168, F.179, L.181, L.184, Y.190, N.212, M.214, L.217 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:I.98, A:L.100, A:I.122, A:Y.144, A:Y.144, A:L.181, A:L.184, A:Y.190 Water bridges: A:L.100 pi-Stacking: A:Y.190 Halogen bonds: A:A.166

1 x MYR: MYRISTIC ACID(Non-covalent)

MYR.3: 3 residues within 4Å: Chain D: G.1, I.29, N.30 1 PLIP interactions: 1 interactions with chain D Hydrophobic interactions: D:I.29

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Y. et al., Structural and virological studies of the stages of virus replication that are affected by antirhinovirus compounds. J.Virol. (2004)

Release Date

2003-12-16

Peptides

coat protein VP1: A
coat protein VP2: B
coat protein VP3: C
coat protein VP4: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

coat protein VP1

coat protein VP2

coat protein VP3

coat protein VP4

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