SMTL ID : 1fjq.1

THERMOLYSIN (70% ACETONE SOAKED CRYSTALS)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.142, E.143, H.146, E.166 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.142, A:H.146, A:E.166, A:E.166, H2O.1

4 x CA: CALCIUM ION(Non-covalent)

CA.2: 6 residues within 4Å: Chain A: D.138, E.177, D.185, E.187, E.190 Ligands: CA.3 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.177, A:E.177, A:D.185, A:E.190, A:E.190 CA.3: 6 residues within 4Å: Chain A: E.177, K.182, N.183, D.185, E.190 Ligands: CA.2 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.177, A:N.183, A:D.185, A:E.190, H2O.28 CA.4: 3 residues within 4Å: Chain A: D.57, D.59, Q.61 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.57, A:Q.61, H2O.14, H2O.25, H2O.45 CA.5: 4 residues within 4Å: Chain A: Y.193, T.194, I.197, D.200 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:Y.193, A:I.197, A:D.200, H2O.36, H2O.63

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.6: 4 residues within 4Å: Chain A: H.216, S.218, K.219, Y.251 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.218 pi-Cation interactions: A:H.216

6 x ACN: ACETONE(Non-covalent)

ACN.7: 5 residues within 4Å: Chain A: N.112, V.139, H.142, L.202, R.203 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.139 Hydrogen bonds: A:R.203, A:R.203 ACN.8: 6 residues within 4Å: Chain A: Y.84, S.92, Y.93, I.100, L.144, V.148 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Y.84, A:Y.93, A:I.100, A:L.144, A:L.144, A:V.148 Water bridges: A:S.92 ACN.9: 2 residues within 4Å: Chain A: Y.27, A.56 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Y.27, A:A.56 Water bridges: A:S.53, A:A.56 ACN.10: 5 residues within 4Å: Chain A: G.248, T.249, S.254, V.255, V.256 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:V.256 ACN.11: 1 residues within 4Å: Chain A: Y.46 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Y.46 ACN.12: 3 residues within 4Å: Chain A: L.202, Y.211, D.213 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Y.211

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

English, A.C. et al., Experimental and computational mapping of the binding surface of a crystalline protein. Protein Eng. (2001)

Release Date

2001-04-18

Peptides

THERMOLYSIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

THERMOLYSIN

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