SMTL ID : 1fjt.1

THERMOLYSIN (50% ACETONITRILE SOAKED CRYSTALS)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.142, E.143, H.146, Y.157, E.166 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.142, A:H.146, A:E.166, A:E.166, H2O.1

4 x CA: CALCIUM ION(Non-covalent)

CA.2: 6 residues within 4Å: Chain A: D.138, E.177, D.185, E.187, E.190 Ligands: CA.3 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.177, A:E.177, A:D.185, A:E.190, A:E.190 CA.3: 6 residues within 4Å: Chain A: E.177, K.182, N.183, D.185, E.190 Ligands: CA.2 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.177, A:N.183, A:D.185, A:E.190, H2O.1, H2O.2 CA.4: 3 residues within 4Å: Chain A: D.57, D.59, Q.61 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.59, A:Q.61, H2O.1, H2O.1, H2O.2 CA.5: 4 residues within 4Å: Chain A: Y.193, T.194, I.197, D.200 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:Y.193, A:T.194, A:I.197, A:D.200, H2O.3

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.6: 3 residues within 4Å: Chain A: H.216, S.218, Y.251 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.218 pi-Cation interactions: A:H.216

1 x VAL: VALINE(Non-covalent)

VAL.7: 7 residues within 4Å: Chain A: N.112, A.113, E.143, L.202, R.203, H.231 Ligands: LYS.8 7 PLIP interactions: 6 interactions with chain A, 1 Ligand-Ligand interactions Hydrophobic interactions: A:L.202 Hydrogen bonds: A:E.143, A:E.143, A:R.203, A:R.203, K.8 Water bridges: A:N.112

1 x LYS: LYSINE(Non-covalent)

LYS.8: 5 residues within 4Å: Chain A: N.111, N.112, F.130, H.231 Ligands: VAL.7 7 PLIP interactions: 4 interactions with chain A, 3 Ligand-Ligand interactions Hydrogen bonds: A:N.111, A:N.112, A:N.112 Salt bridges: A:H.231, K.8 Water bridges: V.7, K.8

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

English, A.C. et al., Experimental and computational mapping of the binding surface of a crystalline protein. Protein Eng. (2001)

Release Date

2001-04-18

Peptides

THERMOLYSIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

THERMOLYSIN

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